Table 2.
A summary of genes of which their RNAs are identified as SR45-associated (SAR) and SR45-dependent alternatively spliced (SAS), and of which their proteins are differentially accumulated in an SR45-dependent manner. The RNA for these proteins is not differentially expressed in the sr45-1 mutant (Zhang et al., 2017).
| AGI | Gene names | Protein FC | Hypermethylated gene in ibm1 mutant |
|---|---|---|---|
| (sr45-1/Col-0) | |||
| AT1G16610 | Serine/arginine-rich splicing factor SR45;SR45;ortholog | 0.072 | |
| AT1G65540 | LETM1-like protein;At1g65540;ortholog | 0.244 | Yes |
| AT5G13980 | Alpha-mannosidase; At5g13980;ortholog | 0.350 | Yes |
| AT3G10160 | Folylpolyglutamate synthase;FPGS2;ortholog | 0.448 | Yes |
| AT2G30170 | Probable protein phosphatase 2C 26;At2g30170;ortholog | 0.457 | |
| AT4G30310 | FGGY family of carbohydrate kinase;At4g30310;ortholog | 0.505 | |
| AT5G13690 | Alpha-N-acetylglucosamini dase;CYL1;ortholog | 0.515 | Yes |
| AT4G10060 | Non-lysosomal glucosylcerami dase; At4g10060;ortholog | 0.535 | |
| AT4G10030 | Hydrolase, alpha/beta fold family protein; T5L19.160;ortholog | 0.633 | |
| AT3G07610 | Lysine-specific demethylase JMJ25;JMJ25;ortholog | 0.725 | Yes |
| AT1G01710 | Acyl-CoA thioesterase family protein;At1g01710;ortholog | 0.741 |