The Design Principles of Biochemical Timers: Circuits That Discriminate Between Transient and Sustained Stimulation

. Author manuscript; available in PMC: 2020 Sep 25.

Published in final edited form as: Cell Syst. 2019 Sep 11;9(3):297–308.e2. doi: 10.1016/j.cels.2019.07.008

KEY RESOURCES TABLE

REAGENT or RESOURCE	SOURCE	IDENTIFIER
Software and Algorithms
Circuit simulator and dose response feature calculator	This study	https://github.com/jgerardin/persistence-detection
Topology generation and parameter sampling scripts	This study	https://github.com/jgerardin/persistence-detection
Cluster for phenotypic clustering	de Hoon 2004	https://www.encodeproject.org/software/cluster/
SciPy linalg.svd for principal component analysis	SciPy	https://www.scipy.org
Java TreeView	Saldanha 2004	http://jtreeview.sourceforge.net/