Table 2.

Assembly quality metrics.

	EGSF	EGSM	EGUF	EGUM	GFAF	GFAM	GFBF	GFBM	GFCF	GFCM	GPCF	GPCM	GWF	GWM
n_seqs	166,100	211,358	162,914	133,658	182,439	383,876	325,379	344,409	280,883	324,661	245,224	257,575	214,232	183,988
largest	21,406	28,082	25,426	29,815	11,828	22,574	26,858	21,757	29,633	25,029	17,350	17,019	27,829	22,483
n_bases	178,852,651	228,738,512	168,030,154	142,457,935	118,459,292	283,956,781	259,691,927	263,406,154	226,877,323	236,552,608	198,832,295	180,448,306	186,939,687	144,019,426
mean_len	1076.8	1082.2	1031.4	1065.8	649.3	739.7	798.1	764.8	807.7	728.6	810.8	700.6	872.6	782.8
n_over_1k	42,496	54,408	44,211	38,307	31,373	76,176	66,143	67,014	57,497	58,066	50,528	44,353	49,495	38,349
n_over_10k	498	827	348	324	5	156	345	308	303	202	232	29	311	101
n_with_orf	35,470	58,284	38,503	30,621	32,784	78,940	62,829	65,479	53,123	56,151	40,810	33,985	46,313	40,639
mean_orf (%)	41.0	47.9	46.0	43.3	51.9	54.2	50.5	50.7	49.3	50.2	45.3	44.1	50.2	51.2
n90	355	361	340	357	270	282	285	284	289	273	283	271	310	300
n50	2646	2594	2278	2299	963	1240	1518	1354	1555	1290	1622	1187	1703	1328
n10	7494	7850	6812	6736	2978	4256	5442	5071	5593	4958	5522	4319	5767	4539
gc(%)	42.7	42.5	43.6	43.4	42.6	41.8	43.6	43.0	43.8	43.4	43.5	42.4	43.3	43.1
RMBT(%)*	91.7	94.4	89.6	91.9	88.2	83.9	90.1	82.7	87.7	86.1	81.9	84.8	87.2	86.5
G-RMBT(%)*	80.7	86.8	75.2	73.5	76.5	65.1	82.0	61.9	75.8	70.0	63.9	66.4	75.4	70.6
Score#	0.16	0.16	0.11	0.11	0.18	0.12	0.13	0.10	0.12	0.11	0.10	0.12	0.14	0.15

*RMBT means Reads Mapping Back on the Transcriptome; G-RMBT means Good Reads Mapping Back on the Transcriptome.

^#Score calculated by Transrate.