| ANM | Anisotropic Network Model |
| BPTI | Bovine Pancreatic Trypsin Inhibitor |
| EM | Electron Microscopy |
| ENM | Elastic Network Model |
| GNM | Gaussian Network Model |
| MD | Molecular Dynamics |
| MMTK | Molecular Modeling Toolkit |
| NMA | Normal Mode Analysis |
| NMR | Nuclear Magnetic Resonance |
| PCA | Principal Components Analysis |
| PDB | Protein Data Bank |
| RMSD | Root-Mean Square Deviation |
| RTB | Rotating-Translating Blocks |
| SAXS | Small Angle X-ray Scattering |