Table 2.

Performance summary of LDA, DeepCyTOF, NMC, and k‐NN on the HMIS dataset

	HMIS‐1		HMIS‐2
	Accuracy	Median F1‐score	Accuracy	Median F1‐score
LDA CV‐Cells	99.38 ± 0.01	0.99	87.19 ± 0.05	0.81
LDA CV‐Samples	99.02 ± 2.26	0.99 (0.98a)	86.11 ± 3.86	0.79 (0.87a)
LDA Conservative CV‐Samples	98.91 ± 1.87	0.99	78.69 ± 8.65	0.62
DeepCyTOFa	n.a.	0.72 ± 0.06b	n.a.	0.36 ± 0.02b
NMC	96.42 ± 3.19	0.96	83.34 ± 4.11	0.77
k‐NN CV‐Samples	n.a	n.a.	87.73 ± 4.09	0.81
k‐NN CV‐Samples with feature selection	n.a.	n.a.	86.33 ± 3.17	0.79

n.a.: not available.

^aWeighted F1‐score.

^bMean ± SD of 10 different runs.