Figure 4.

ChIP‐seq (above) and microarray transcriptional profiling data (below) for the Class II σ^E target genes sco2334, sco2897, sco3044, sco3712, sco4134, sco4471, sco4847, sco5030, sco5358 and the 12‐gene cwg operon (sco6179‐6190). Class II targets have a single promoter that is partially dependent on σ^E for its transcription (see, for example, Fig. 6B). In the ChIP‐seq panels, the black arrows indicate the genes subject to σ^E‐dependent transcription. In the microarray transcriptional profiling panels, the x‐axis indicates the time in minutes (0, 30, 60 or 90) after the addition of 10 µg/ml vancomycin, and the y‐axis indicates the per gene normalized transcript abundance (log₂). See the legend to Fig. 3 for explanation of the colour‐coding.