Table 1.
List of miRNAs common in human and mouse miRNome datasets.
Name | Species | Cluster (miRNA) | Chromosome position | miRNA mature seq | miRNA* mature seq |
---|---|---|---|---|---|
miR-106a | hsa | Yes (miR-18b, miR-20b, miR-19b-2, miR-92a-2, miR-363) | chrX: 134170198-134170278 | AAAAGUGCUUACAGUGCAGGUAG | CUGCAAUGUAAGCACUUCUUAC |
mmu | Yes (miR-18b, miR-20b, miR-19b-2, miR-92a-2, miR-363) | chrX: 52742503-52742567 | AAAGUGCUACAGUGCAGGUAG | CUGCAUGCAGCACUUCUUAC | |
miR-130a | hsa | No | chr17: 59151136-59151221 | GCUCUGACUUUAUUGCACUACUCAGUGCAAUAGUAUUGUCAAAGC | |
mmu | No | chr11: 87113004-87113089 | CAGUGCAAUAGUAUUGUCAAAGC | GCUCUGACUUUAUUGCACUACU | |
miR-130b | hsa | yes (miR-301b) | chr22: 21653304-21653385 | CAGUGCAAUGAUGAAAGGGCAU | ACUCUUUCCCUGUUGCACUAC |
mmu | yes (miR-301b) | chr16: 17124061-17124142 | CAGUGCAAUGAUGAAAGGGCAU | ACUCUUUCCCUGUUGCACUAC | |
miR-132 | hsa | Yes (miR-212) | chr17: 2050271-2050380 | UAACAGUCUACAGCCAUGGUCG | ACCGUGGCUUUCGAUUGUUAC |
mmu | Yes (miR-212) | chr11: 75173388-75173478 | UAACAGUCUACAGCCAUGGUCG | ACCGUGGCUUUCGAUUGUUAC | |
miR-139-5p | hsa | No | chr11: 72615063-72615130 | UCUACAGUGCACGUGUCUCCAG | |
mmu | No | chr7: 101475376-101475443 | UCUACAGUGCACGUGUCUCCAG | ||
miR-146a | hsa | No | chr5: 160485352-160485450 | UGAGAACUGAAUUCCAUGGGUU | CCUCUGAAAUUCAGUUCUUCAG |
mmu | No | chr11: 43374397-43374461 | UGAGAACUGAAUUCCAUGGGUU | CCUGUGAAAUUCAGUUCUUCAG | |
miR-148a | hsa | No | chr7: 25949919-25949986 | UCAGUGCACUACAGAACUUUGU | AAAGUUCUGAGACACUCCGACU |
mmu | No | chr6: 51269812-51269910 | UCAGUGCACUACAGAACUUUGU | AAAGUUCUGAGACACUCCGACU | |
miR-150 | hsa | No | chr19: 49500785-49500868 | UCUCCCAACCCUUGUACCAGUG | CUGGUACAGGCCUGGGGGACAG |
mmu | yes (miR-5121) | chr7: 45121757-45121821 | UCUCCCAACCCUUGUACCAGUG | CUGGUACAGGCCUGGGGGAAG | |
miR-17 | hsa | Yes (miR-18a, miR-19a, miR-20a, miR-19b-1, miR-92a-1) | chr13: 91350605-91350688 | CAAAGUGCUUACAGUGCAGGUAG | ACUGCAGUGAAGGCACUUGUAG |
mmu | Yes (miR-18a, miR-19a, miR-20a, miR-19b-1, miR-92a-1) | chr14: 115043671-115043754 | CAAAGUGCUUACAGUGCAGGUAG | ACUGCAGUGAGGCACUUGUAG | |
miR-18a | hsa | Yes (miR-17, miR-19a, miR-20a, miR-19b-1, miR-92a-1) | chr13: 91350751-91350821 | UAAGGUGCAUCUAGUGCAGAUAG | ACUGCCCUAAGUGCUCCUUCUG |
mmu | Yes (miR-17, miR-19a, miR-20a, miR-19b-1, miR-92a-1) | chr14: 115043851-115043946 | UAAGGUGCAUCUAGUGCAGAUAG | ACUGCCCUAAGUGCUCCUUCUG | |
miR-18b | hsa | Yes (miR-106a, miR-20b, miR-19b-2, miR-92a-2, miR-363) | chrX: 134170041-134170111 | UAAGGUGCAUCUAGUGCAGUUAG | UGCCCUAAAUGCCCCUUCU |
mmu | Yes (miR-106a, miR-20b, miR-19b-2, miR-92a-2, miR-363) | chrX: 52742331-52742413 | UAAGGUGCAUCUAGUGCGUUAG | UGCCCUAAAUGCCCCUUCU | |
miR-19b-1 | hsa | Yes (miR-17, miR-19a, miR-18a, miR-20a, miR-92a-1) | chr13: 91351192-91351278 | UGUGCAAAUCCAUGCAAAACUGA | AGUUUUGCAGGUUUGCAUCCAGC |
mmu | Yes (miR-17, miR-19a, miR-18a, miR-20a, miR-92a-1) | chr14: 115044305-115044391 | UGUGCAAAUCCAUGCAAAACUGA | AGUUUUGCAGGUUUGCAUCCAGC | |
miR-19b-2 | hsa | Yes (miR-106a, miR-18b, miR-20b, miR-92a-2, miR-363) | chrX: 134169671-134169766 | UGUGCAAAUCCAUGCAAAACUGA | AGUUUUGCAGGUUUGCAUUUCA |
mmu | Yes (miR-106a, miR-18b, miR-20b, miR-92a-2, miR-363) | chrX: 52741983-52742066 | UGUGCAAAUCCAUGCAAAACUGA | AGUUUUGCAGUUUGCAUUCA | |
miR-20b | hsa | Yes (miR-106a, miR-18b, miR-19b-2, miR-92a-2, miR-363) | chrX: 134169809-134169877 | CAAAGUGCUCAUAGUGCAGGUAG | ACUGUAGUAUGGGCACUUCCAG |
mmu | Yes (miR-106a, miR-18b, miR-19b-2, miR-92a-2, miR-363) | chrX: 52742113-52742192 | CAAAGUGCUCAUAGUGCAGGUAG | ACUGAGUUGGCACUUCAG | |
miR-21 | hsa | No | chr17: 59841266-59841337 | UAGCUUAUCAGACUGAUGUUGA | CAACACCAGUCGAUGGGCUGU |
mmu | No | chr11: 86584067-86584158 | UAGCUUAUCAGACUGAUGUUGA | CAACACAGUCGAUGGGCUGU | |
miR-223 | hsa | No | chrX: 66018870-66018979 | UGUCAGUUUGUCAAAUACCCCA | CGUGUAUUUGACAAGCUGAGUU |
mmu | No | chrX: 96242817-96242926 | UGUCAGUUUGUCAAAUACCCCA | CGUGUAUUUGACAAGCUGAGUU | |
miR-25 | hsa | Yes (miR-106b, miR-93) | chr7: 100093560-100093643 | CAUUGCACUUGUCUCGGUCUGA | AGGCGGAGACUUGGGCAAUUG |
mmu | Yes (miR-106b, miR-93) | chr5: 138165321-138165404 | CAUUGCACUUGUCUCGGUCUGA | AGGCGGAGACUUGGGCAAUUG | |
miR-29a | hsa | Yes (miR-29b-1) | chr7: 130876747-130876810 | UAGCACCAUCUGAAAUCGGUUA | ACUGAUUUCUUUUGGUGUUCAG |
mmu | Yes (miR-29b-1) | chr6: 31062660-3106274 | UAGCACCAUCUGAAAUCGGUUA | ACUGAUUUCUUUUGGUGUUCAG | |
miR-29c | hsa | Yes (miR-29b-2) | chr1: 207801852-207801939 | UAGCACCAUUUGAAAUCGGUUA | UGACCGAUUUCUCCUGGUGUUC |
mmu | Yes (miR-29b-2) | chr1: 195037547-195037634 | UAGCACCAUUUGAAAUCGGUUA | UGACCGAUUUCUCCUGGUGUUC | |
miR-30a | hsa | No | chr6: 71403551-71403621 | UGUAAACAUCCUCGACUGGAAG | CUUUCAGUCGGAUGUUUGCAGC |
mmu | No | chr1: 23272269-23272339 | UGUAAACAUCCUCGACUGGAAG | CUUUCAGUCGGAUGUUUGCAGC | |
miR-342-3p | hsa | Yes (miR-151b) | chr14: 100109655-100109753 | UCUCACACAGAAAUCGCACCCGU | |
mmu | No | chr12: 108658620-108658718 | UCUCACACAGAAAUCGCACCCGU | ||
miR-433 | hsa | Yes (miR-337, miR-665, miR-431, miR-127, miR-432, miR-136) | chr14: 100881886-100881978 | UACGGUGAGCCUGUCAUUAUUCAUCAUGAUGGGCUCCUCGGUGU | |
mmu | Yes (miR-337, miR-3544, miR-665, miR-3070-1, miR3070-2, miR-431, miR-127, miR-434, miR-432, miR-3071, miR-136) | chr12: 109591715-109591838 | AUCAUGAUGGGCUCCUCGGUGU | UACGGUGAGCCUGUCAUUAUUC | |
miR-487b | hsa | Yes (miR-376c, miR-376a-2, miR-654, miR-376b, miR-300, miR-1185-1, miR-1185-2, miR-381, miR-539, miR-889, miR-544a, miR-655, miR-487a, miR-382, miR-134, miR-668, miR-485, miR-323b) | chr14: 101046455-101046538 | GUGGUUAUCCCUGUCCUGUUCGAAUCGUACAGGGUCAUCCACUU | |
mmu | Yes (miR-495, miR-667, miR-376c, miR-654, miR-376b, miR-376a, miR-300, miR-381, miR-539, miR-889, miR-544, miR-382, miR-134, miR-668, miR-485, miR-453) | chr12: 109727333-109727414 | AAUCGUACAGGGUCAUCCACUU | UGGUUAUCCCUGUCCUCUUCG | |
miR-496 | hsa | Yes (miR-487a, miR-382, miR-134, miR-668, miR-485, miR-323b, miR-154, miR-377, miR-541, miR-409, miR-412, miR-369, miR-410, miR-656) | chr14: 101060573-101060674 | UGAGUAUUACAUGGCCAAUCUC | |
mmu | Yes (miR-544, miR-382, miR-134, miR-668, miR-485, miR-453, miR-154, miR-377, miR-541, miR-409, miR-412, miR-369, miR410, miR-3072) | chr12: 109739119-109739197 | UGAGUAUUACAUGGCCAAUCUC | AGGUUGCCCAUGGUGUGUUCA | |
miR-99a | hsa | Yes (miR-let-7c) | chr21: 16539089-16539169 | AACCCGUAGAUCCGAUCUUGUG | CAAGCUCGCUUCUAUGGGUCU |
mmu | Yes (miR-let-7c) | chr16: 77598936-77599000 | AACCCGUAGAUCCGAUCUUGUG | CAAGCUCGUUUCUAUGGGUCU |
hsa, human; mmu, mouse; chr, chromosome. Red highlights nucleotide differences between humans and mice.