Table 2. Summary of the placement and parameterization of the AGBNP2 enclosed hydration spheres for the dopamine D3 receptor binding site.
Locationa | HSA site Idb | AGBNP2 site Idb | AGBNP2 anchoring type c | f | ||
---|---|---|---|---|---|---|
OBS | 0 | 0,1 | Asp 110 backbone carbonyl | 1.00 | 2.36 | 2.36 |
OBS | 3,4,8,21 | 3,4,5 | Asp 110 side chain carboxylate | 0.86 | 3.28 | 2.83 |
OBS | 25,26 | 9 | Center of mass | 0.66 | 1.92 | 1.27 |
OBS | 14,19,41 | 12 | Center of mass | 0.57 | 5.32 | 3.05 |
OBS | 1 | 13 | Center of mass | 0.87 | 2.80 | 2.44 |
OBS/SBS boundary | 11 | 10 | Center of mass | 0.83 | 2.32 | 1.92 |
OBS/SBS boundary | 9 | 18 | Ser 182 hydroxyl hydrogen | 0.87 | 0.21 | 0.19 |
SBS | 12 | 11 | Center of mass | 0.63 | 0.92 | 0.58 |
SBS | 34,42 | 14 | Center of mass | 0.58 | 1.31 | 0.77 |
SBS | 5 | 15 | Center of mass | 0.95 | 0.34 | 0.33 |
SBS | 15 | 16 | Center of mass | 0.68 | 0.50 | 0.34 |
SBS | 37 | 17 | Center of mass | 0.34 | 0.08 | 0.03 |
aOBS: Orthosteric binding site; SBS: Secondary binding site.
bSte Id as shown in Fig 3
cSee reference.
dAverage water occupancy of the site measured by HSA
eAverage energy of the site relative to bulk measured by HSA, Ebulk = −12.24 kcal/mol.
fOverall energy score of the HSA sites indicated in column 2 and of the enclosed hydration score of the AGBNP2 hydration spheres indicated in column 3 in kcal/mol.