Table 5.

The most frequent splice sites of the HSV-1 transcriptome.

Intron start	Intron end	Read count	DNA strand	Splice donor/acceptor
2,318	3,082	20	+	GT/AG
3,750	3,888	6	+	GT/AG	*
3,750	3,885	8	+	GT/AG
13,449	13,931	37	–	GT/AG	*
30,049	33,634	198	+	GT/AG
69,593	69,923	12	+	GT/AG	*
69,670	69,923	20	+	GT/AG	*
71,622	71,712	2	–	GC/AG	*
71,622	71,718	6	–	GC/AG	*
71,622	71,724	2	–	GC/AG	*
71,622	71,736	2	–	GC/AG	*
71,622	71,748	4	–	GC/AG	*
91,553	92,535	120	+	GT/AG
97,724	97,949	228	+	GT/AG
113,428	113,786	40	+	GT/AG	*
122,483	122,621	7	–	GT/AG	*
122,486	122,621	8	–	GT/AG	*
123,289	124,053	20	–	GT/AG	*
132,373	132,540	74	+	GT/AG	*
132,373	132,506	269	+	GT/AG	*
132,373	132,487	34	+	GT/AG	*
132,373	132,543	2	+	GT/AG	*
132,381	132,518	2,995	–	GT/AG	*
132,386	132,540	11	+	GT/AG	*
132,386	132,506	34	+	GT/AG	*
132,386	132,509	31	+	GT/AG	*
145,646	145,820	66	–	GT/AG	*
145,646	145,860	34	–	GT/AG	*
145,649	145,820	1,077	–	GT/AG	*
145,649	145,860	824	–	GT/AG	*
145,649	145,847	3	–	GT/AG	*
145,671	145,852	23	+	GT/AG	*
145,671	145,873	13	+	GT/AG	*
145,680	145,847	7	–	GT/AG	*
145,683	145,860	53	–	GT/AG	*
145,683	145,847	17	–	GT/AG	*

The newly discovered splice sites are labeled with asterisks.