Table 2.
Defense-related differentially expressed genes (DEGs) in leaves in response to Paraburkholderia kururiensis and Burkholderia vietnamiensis. Presented genes are part of the top 200 up-regulated and down-regulated significantly DEGs [false discovery rate (FDR) < 0.01]; all results for leaf transcriptome can be found in Supplementary Table 6.
| Gene ID | Log2 fold change | Gene Symbol/Trait Ontology | RAP Annotation | |
|---|---|---|---|---|
| P. kururiensis | B. vietnamiensis | |||
| Os05g0537100 | 1.70 | 2.44 | WRKY7 | WRKY7 |
| Os07g0539900 | −2.17 | −1.59 | PR2 | Similar to beta-1,3-glucanase-like protein |
| Os02g0118875 | −1.89 | −1.80 | NB-ARC | NB-ARC domain-containing protein |
| Os01g0940800 | −1.74 | −1.52 | Gns6 | Similar to beta-1,3-glucanase precursor |
| Os10g0124400 | −1.54 | −1.67 | NB-ARC | Hypothetical conserved gene |
| Os05g0492600 | −1.84 | −1.59 | YR48 | Similar to NBS-LRR type resistance protein |
| Os01g0731100 | 2.69 | PR | Similar to pathogen-related protein | |
| Os02g0759400 | 2.57 | RING1/Disease resistance | Zinc finger, RING/FYVE/PHD-type domain-containing protein | |
| Os02g0787300 | 1.88 | MAPKK4 | Mitogen-activated protein kinase kinase 4, defense response | |
| Os02g0626100 | 1.70 | PAL1 | Similar to phenylalanine ammonia-lyase | |
| Os02g0181300 | 1.66 | WRKY71 | WRKY transcription factor, defense response | |
| Os12g0520200 | 1.56 | PAL3 | Similar to phenylalanine ammonia-lyase | |
| Os01g0855600 | 1.55 | HS1 | Similar to Hs1pro-1 protein | |
| Os11g0227200 | −1.57 | LRR/Disease resistance | Similar to NBS-LRR disease resistance protein homologue | |
| Os02g0570400 | −1.61 | KSL7/Disease resistance | Similar to Ent-kaurene synthase 1A | |
| Os09g0474000 | −1.67 | TFX1/Disease resistance | bZIP transcription factor, bZIP-1 domain-containing protein | |
| Os01g0859500 | −1.73 | LG2 | Similar to basic leucine zipper protein (Ligueless2) | |
| Os05g0375400 | 2.21 | PR2, OsEGL1 | Beta-glucanase precursor | |
| Os03g0320600 | 1.98 | VQ11 | VQ domain-containing protein | |
| Os08g0170200 | 1.88 | Disease resistance protein domain-containing protein | ||
| Os04g0462500 | 1.75 | GF14b, GF14b, 14-3-3b | Similar to 14-3-3-like protein GF14-6 | |
| Os04g0680800 | 1.64 | MLO4, MLO4 | Mlo-related protein family protein | |
| Os11g0505300 | 1.63 | STV11, SOT1 | Sulfotransferase, resistance to rice stripe virus | |
| Os12g0468300 | 1.63 | NB-ARC | Similar to NB-ARC domain-containing protein, expressed | |
| Os02g0251900 | 1.61 | VQ7 | Similar to tobacco rattle virus-induced protein variant 2 | |
| Os04g0118800 | 1.54 | NB-ARC | NB-ARC domain-containing protein | |
| Os01g0837000 | 1.54 | NPR4, NPR4 | Ankyrin repeat containing protein | |
| Os11g0604900 | 1.51 | NB-ARC | Similar to NB-ARC domain-containing protein | |
| Os01g0289600 | −1.46 | WRKY9 | Similar to WRKY transcription factor 9 | |
| Os01g0382000 | −1.47 | PR1b | Similar to pathogenesis-related protein PRB1-2 precursor | |
| Os08g0235800 | −1.49 | WRKY25 | Similar to WRKY transcription factor 25 | |
| Os10g0569400 | −1.50 | Rir1a | RIR1a protein precursor | |
| Os08g0386200 | −1.55 | WRKY69 | WRKY transcription factor 69 | |
| Os05g0427400 | −1.64 | PAL4 | Similar to phenylalanine ammonia-lyase | |
| Os08g0173600 | −1.86 | PROPEP4/Anti herbivore response | Conserved hypothetical protein | |
| Os07g0117900 | −1.90 | NB-ARC | NB-ARC domain-containing protein | |
| Os06g0244000 | −2.09 | AAMT | Similar to anthranilic acid methyltransferase 3 | |
| Os04g0205200 | −2.09 | NB-ARC | NB-ARC domain-containing protein | |
| Os03g0195100 | −2.16 | ALD1 | Putative aminotransferase, response against blast fungus | |
| Os12g0154800 | −2.31 | GLP12-2 | Germin-like protein 12-2, disease resistance | |
| Os12g0154700 | −2.91 | GLP12-1 | Germin-like protein 12-1, disease resistance | |