Table 3.
Defense-related differentially expressed genes (DEGs) in roots in response to Paraburkholderia kururiensis and Burkholderia vietnamiensis. Presented genes are part of the top 200 up-regulated and down-regulated significantly DEGs [false discovery rate (FDR) < 0.01]; all results for root transcriptome can be found in Supplementary Table 7.
| Gene ID | Log2 fold change | Gene Symbol/Trait Ontology | RAP Annotation | |
|---|---|---|---|---|
| P. kururiensis | B. vietnamiensis | |||
| Roots | ||||
| Os08g0332600 | 1.07 | 0.74 | NB-ARC | Disease resistance protein domain-containing protein |
| Os08g0189500 | −1.15 | −1.57 | OsGLP8-6 | Germin-like protein 8-6, disease resistance |
| Os08g0231400 | −1.15 | −1.62 | GLP8-12 | Germin-like protein 8-12, Disease resistance |
| Os10g0537800 | −1.76 | −1.80 | AP77 | Peptidase aspartic, catalytic domain-containing protein |
| Os12g0500500 | −1.72 | −1.84 | NB-ARC | NB-ARC domain-containing protein |
| Os01g0508500 | −2.07 | −1.89 | RH2/NRR repressor homolog 2 | Conserved hypothetical protein |
| Os02g0807900 | −1.12 | −2.17 | WAK21 | Conserved hypothetical protein |
| Os09g0417600 | −1.92 | −2.64 | WRKY76 | WRKY transcription factor, transcriptional repressor |
| Os03g0195100 | −1.91 | −2.65 | ALD1 | Putative aminotransferase, response against blast fungus |
| Os09g0417800 | −2.49 | −2.66 | WRKY62 | WRKY transcription factor, transcriptional repressor |
| Os01g0508100 | −2.07 | −2.83 | RH3/NRR repressor homolog 3 | Ferritin/ribonucleotide reductase-like family protein |
| Os06g0105100 | −2.75 | −3.16 | WRKY86 | Similar to legumain |
| Os05g0247800 | −3.47 | −3.74 | XIP | Glycoside hydrolase, family 18 protein |
| Os08g0332600 | 1.07 | NB-ARC | Disease resistance protein domain-containing protein | |
| Os08g0446200 | 0.75 | OsPEPR1 | Similar to receptor-like protein kinase precursor | |
| Os12g0448900 | 0.74 | PIOX, RalphaO | Fatty acid alpha-dioxygenase family | |
| Os09g0127300 | 0.71 | CCR17 | NAD(P)-binding domain-containing protein | |
| Os12g0199100 | 0.70 | NB-ARC | NB-ARC domain-containing protein | |
| Os07g0273700 | 0.69 | WRKY123 | Disease resistance protein domain-containing protein | |
| Os01g0269800 | 0.68 | NB-ARC | NB-ARC domain-containing protein | |
| Os03g0411100 | 0.64 | OsHAP2E | Heme activator protein, biotic and abiotic resistances | |
| Os11g0152700 | 0.43 | OsbZIP79 | Similar to transcription factor HBP-1b(C38) (fragment) | |
| Os02g0626400 | 0.41 | PAL8 | Phenylalanine ammonia-lyase (EC 4.3.1.5) | |
| Os01g0713200 | −1.14 | Gns10 | Similar to beta-glucanase | |
| Os02g0629800 | −1.15 | OsPR12/DEFL7 | Similar to defensin precursor | |
| Os05g0554000 | −1.19 | MATE2 | Similar to cDNA clone:001-123-D07, full insert sequence | |
| Os12g0555200 | −1.20 | PBZ1 | Similar to Probenazole-inducible protein PBZ1 | |
| Os05g0247100 | −1.24 | HI-XIP/Insect resistance | Similar to glycosyl hydrolases family 18 | |
| Os07g0129200 | −1.26 | PR1a | Pathogenesis-related 1a protein | |
| Os07g0127500 | −1.31 | PR1-72 | Similar to PR-1a pathogenesis related protein (Hv-1a) precursor | |
| Os02g0570700 | −1.37 | Cyp71Z7 | Cytochrome P450 family protein | |
| Os01g0947000 | −1.42 | Disease resistance | Similar to beta-1,3-glucanase precursor | |
| Os02g0605900 | −1.45 | CHIT6 | Similar to chitinase (EC 3.2.1.14) A | |
| Os12g0437800 | −1.62 | Sci1, PR6 | Similar to MPI | |
| Os11g0700900 | −1.67 | C10923/Chitinase | Glycoside hydrolase | |
| Os01g0940700 | −1.85 | PR2, Glu1 | Similar to glucan endo-1,3-beta-glucosidase | |
| Os07g0127700 | −1.98 | Disease resistance | Similar to pathogenesis-related protein class 1 | |
| Os12g0628600 | −1.99 | PR5 | Similar to thaumatin-like pathogenesis-related protein 3 precursor | |
| Os07g0663700 | −2.19 | SDR110C-MI3/Disease resistance | Similar to oxidoreductase | |
| Os08g0518900 | −2.27 | C10122/Disease resistance | Chitinase (EC 3.2.1.14) | |
| Os03g0130300 | −2.54 | DEF8 | Similar to Cp-thionin | |
| Os11g0701600 | −2.84 | Chitinase | Glycoside hydrolase, catalytic domain-containing protein | |
| Os04g0316200 | −2.92 | Gnk2-domain protein | Protein of unknown function DUF26 domain-containing protein | |
| Os11g0701800 | −3.16 | OsRIXI/Disease resistance | Chitinase (EC 3.2.1.14) III | |
| Os07g0129300 | −3.67 | PR1a | Similar to PR1a protein | |
| Os11g0701000 | −4.67 | Chib3H-c | Class III chitinase homologue (OsChib3H-c) | |
| Os04g0289500 | 3.58 | PR1 | Allergen V5/Tpx-1-related domain-containing protein | |
| Os12g0491800 | 2.15 | KSL10 | Similar to Ent-kaurene synthase 1A | |
| Os08g0374000 | 0.99 | OsBetvI | Bet v I allergen family protein | |
| Os10g0163040 | 0.96 | NB-ARC | Similar to Blast resistance protein | |
| Os08g0261000 | 0.91 | NB-ARC | NB-ARC domain-containing protein | |
| Os09g0356000 | 0.91 | SIRK1 | Similar to OsD305 | |
| Os01g0859500 | 0.79 | LG2 | Similar to Basic leucine zipper protein (Liguleless2) | |
| Os09g0517200 | −1.65 | NB-ARC | Hypothetical conserved gene | |
| Os05g0478700 | −1.67 | WRKY84 | Hypothetical conserved gene | |
| Os03g0335200 | −1.68 | WRKY79 | Similar to WRKY1 (WRKY transcription factor 17) | |
| Os11g0117500 | −1.75 | WRKY40 | DNA-binding WRKY domain-containing protein | |
| Os06g0649000 | −1.81 | WRKY28 | PAMP-responsive transrepressor | |
| Os04g0635500 | −1.93 | Blast/SA induced | Similar to Wound induced protein (fragment) | |
| Os11g0154500 | −2.09 | Nac17/Disease Resistance | Blast disease-responsive transcription factor, disease resistance | |
| Os11g0462500 | −2.66 | NB-ARC | Similar to NB-ARC domain-containing protein | |
| Os05g0248200 | −4.65 | Chitinase | Glycoside hydrolase, family 18 protein | |
| Os04g0375300 | −6.34 | rNBS56 | Similar to NBS-LRR protein (fragment) | |
| Os06g0279900 | −7.11 | NB-ARC | Similar to NB-ARC domain-containing protein, expressed | |