Table 4.
Hormone-related differentially expressed genes (DEGs) in leaves in response to Paraburkholderia kururiensis and Burkholderia vietnamiensis. Presented genes are part of the top 200 up-regulated and down-regulated significantly DEGs (false discovery rate (FDR) < 0.01); all results for leaf transcriptome can be found in Supplementary Table 6.
| Gene ID | Log2 fold change | Gene Symbol/Function | RAP Annotation | |
|---|---|---|---|---|
| P. kururiensis | B. vietnamiensis | |||
| Gibberellic acid | ||||
| Jasmonate | ||||
| Auxin | ||||
| Ethylene | ||||
| Abscisic acid | ||||
| Cytokinine | ||||
| Brassinosteroid | ||||
| Os06g0729400 | 1.85 | 2.74 | GASR8 | Similar to gibberellin-regulated protein 2 precursor |
| Os09g0470500 | −1.49 | Hox4 | Homeodomain leucine zipper protein | |
| Os03g0352450 | −1.60 | INO80, CHR732/GA signaling | Hypothetical conserved gene | |
| Os08g0560000 | −1.66 | GA20ox7 | Similar to gibberellin 20 oxidase 2 | |
| Os01g0757200 | 2.11 | GA2ox3 | GA 2-oxidase3, GA metabolism | |
| Os06g0110000 | 1.59 | KAO | Similar to DWARF3 (fragment) | |
| Os02g0570400 | −1.61 | KS7 | Similar to Ent-kaurene synthase 1A | |
| Os04g0301500 | 1.88 | −1.65 | RERJ1 | Helix-loop-helix DNA-binding domain-containing protein |
| Os03g0767000 | 2.11 | AOS1 | Allene oxide synthase (CYP74A1), Biosynthesis of jasmonic acid (JA) | |
| Os01g0705700 | 1.84 | MYL1 | Similar to transcription factor ICE1 (Inducer of CBF expression 1) | |
| Os10g0392400 | 1.49 | JAZ12 | Tify domain-containing protein | |
| Os05g0439100 | 1.46 | MYC7E | Similar to transcription factor MYC7E (fragment) | |
| Os03g0181100 | −1.97 | JAZ10 | Tify domain-containing protein | |
| Os01g0643300 | 2.44 | 2.29 | PIN3A | Auxin efflux carrier protein, auxin transport |
| Os12g0601300 | 2.81 | IAA30 | Similar to auxin-responsive protein (Aux/IAA) (fragment) | |
| Os07g0182400 | 1.93 | IAA24 | AUX/IAA protein family protein | |
| Os02g0523800 | 1.72 | IPK2 | Inositol polyphosphate kinase, auxin signaling | |
| Os06g0323100 | −1.53 | IAA Methylase | Similar to H1005F08.18 protein | |
| Os06g0671600 | −1.69 | Small auxin-up RNA 26 | Beta tubulin, autoregulation binding site domain-containing protein | |
| Os05g0528600 | −2.02 | YUCCA2 | Flavin monooxygenase-like enzyme, auxin biosynthesis | |
| Os09g0522000 | 2.94 | −1.91 | DREB1B | Similar to dehydration-responsive element-binding protein 1B |
| Os09g0451000 | 2.19 | 1.64 | ACO2 | ACC oxidase, ethylene biosynthesis |
| Os04g0572400 | 4.19 | DREB1E | Similar to CRT/DRE binding factor 1 | |
| Os02g0677300 | 3.41 | DREB1G | Similar to CRT/DRE binding factor 1 | |
| Os10g0562900 | 2.87 | DERF12 | Non-protein coding transcript | |
| Os08g0474000 | 2.64 | DERF3 | Similar to AP2 domain-containing protein RAP2.6 (fragment) | |
| Os02g0654700 | 2.27 | BIERF3 | AP2/ERF family protein, abiotic stress response | |
| Os09g0522200 | 1.83 | DREB1A | DRE-binding protein 1A | |
| Os07g0155600 | −1.53 | EIN2 | Nramp ion-transporter family protein, ethylene signaling pathway | |
| Os07g0410300 | 4.78 | ERF136 | Conserved hypothetical protein | |
| Os07g0410700 | 1.93 | DERF2 | Similar to Ethylene-responsive element binding protein 1 | |
| Os01g0797600 | 1.66 | BIERF2 | AP2/ERF family protein, stress signaling | |
| Os02g0676800 | −1.94 | ERF20 | Similar to dehydration responsive element binding protein 1E (DREB1E protein) | |
| Os06g0493100 | −2.31 | bphi008a | Conserved hypothetical protein | |
| Os02g0636600 | −2.27 | −1.81 | GEM/ABA-related | GRAM domain-containing protein |
| Os02g0703600 | 3.07 | ABA8OX1 | Similar to abscisic acid 8′-hydroxylase 1 | |
| Os07g0569100 | 1.86 | REM4.1 | Remorin protein, coordination of interlink between ABA and BR signaling | |
| Os07g0281800 | −1.57 | ABA synthesis | Similar to aldehyde oxidase-2 | |
| Os02g0182100 | −1.80 | RR24 | B-type response regulator, cytokinin signaling | |
| Os11g0143300 | −1.71 | RR9 | A-type response regulator, cytokinin signaling | |
| Os01g0952500 | −1.77 | RR4 | A-type response regulator, cytokinin signaling | |
| Os08g0460600 | −1.89 | CKX11 | Similar to cytokinin dehydrogenase 11 | |
| Os01g0197100 | 1.72 | dwf2, SMG11 | Cytochrome P450, brassinosteroids biosynthesis, Regulation of plant architecture | |
| Os09g0409950 | −1.48 | BRI1-interacting protein 120 | Hypothetical conserved gene | |
| Strigolactone | ||||
| Os01g0935400 | 1.62 | AtLBO ortholog | 2OG-Fe(II) oxygenase domain-containing protein | |
| Salicylic acid | ||||
| Os04g0581100 | −2.01 | S3H/SA conjugation | 2OG-Fe(II) oxygenase domain-containing protein | |