Table 1.

Area under the ROC curves (AUCs) of GCNLDA and other methods for all the diseases and 10 well-characterized diseases.

Disease Name	AUC
	GCNLDA	SIMCLDA	Ping’s Method	MFLDA	LDAP
Average AUC on 405 diseases	0.959	0.746	0.871	0.626	0.863
respiratory system cancer	0.948	0.789	0.911	0.719	0.891
organ system cancer	0.992	0.82	0.95	0.729	0.884
intestinal cancer	0.966	0.811	0.909	0.559	0.905
prostate cancer	0.944	0.873	0.826	0.553	0.71
lung cancer	0.961	0.79	0.911	0.676	0.883
breast cancer	0.963	0.742	0.871	0.517	0.83
reproductive organ cancer	0.962	0.707	0.818	0.74	0.742
gastrointestinal system cancer	0.977	0.784	0.896	0.582	0.867
liver cancer	0.978	0.799	0.91	0.634	0.898
hepatocellular carcinoma	0.983	0.765	0.903	0.688	0.902

The bold values indicate the higher AUCs.