Schema of experimental timeline used to study the effect of Cyclosporin A (CsA) and adenine nucleotide (AdN) on mitochondrial Ca2+ handling and bioenergetics during repeated CaCl2 pulses. (A) In Protocol A, at t = 0 s, mitochondria (mito, 0.5 mg) were added to the Na+-free experimental buffer solution. The mitochondrial suspension was exposed to 0.5 μM CsA, 250 μM ADP, 10 μM oligomycin (OMN), or a combination of OMN+ADP at t = 30 s. Pyruvic acid (PA, 0.5 mM), was added at t = 60 s to energize mitochondria (state 2). At t = 180 s, 20 μM of CaCl2 was added, followed by sequential additions of 20 µM CaCl2 at every 300 s intervals until mPTP (mitochondrial permeability transition pore) opened or no further Ca2+ uptake was observed. (B) In Protocol B, the mitochondrial suspension was exposed to similar treatments as in Protocol A, but given after the last consecutive CaCl2 bolus preceding the imminent onset of mPTP opening.