| Act1 | Actin1 |
| ARP4 | Actin-Related Protein 4 |
| ARP5 | Actin-Related Protein 5 |
| ARP6 | Actin-Related Protein 6 |
| ARP8 | Actin-Related Protein 8 |
| ARP9 | Actin-Related Protein 9 |
| ATC | anaplastic thyroid carcinoma |
| ATP | adenosine triphosphate |
| ATPases | adenosine triphosphatase |
| Bdf1 | Bromodomain factor 1 |
| Brg1 | brahma-related gene 1 |
| CCA1 | CIRCADIAN CLOCK ASSOCIATED1 |
| CHD | chromo and DNA-binding domain |
| CRCs | chromatin-remodeling complexes |
| CSCsCUCs | cancer stem cellsCUP SHAPED COTYLEDONs |
| DMC1 | DISRUPTED MEIOTIC cDNA1 |
| DNA | DeoxyriboNucleic Acid |
| DSBs | DNA double-strand breaks |
| EAF1 | Esa1-associated factor 1 |
| ERF9 | ethylene response factor 9 |
| Esa1 | Essential for SAS Family Acetyltransferase 1 |
| ESD1 | EARLY IN SHORT DAYS 1 |
| FLC | FLOWERING LOCUS C |
| FLX | FLC EXPRESSOR |
| FT | FLOWERING LOCUS T |
| FUL | FRUITFULL |
| GI | GIGANTEA |
| HAM1 | HAIRY MERISTEM 1 |
| Hda1 | Histone deacetylase 1 |
| HR | homologous recombination |
| HSA | helicase/SANT-associated |
| hta11 | HISTONE H2A 11 |
| hta9 | HISTONE H2A 9 |
| IAA19 | AUXIN-RESPONSIVE PROTEIN 19 |
| Ies1-6 | Ino Eighty Subunit 1-6 |
| INO80 | Inositol Requiring 80 |
| INO80-c | INO80 complex |
| ISWI | imitation SWI |
| MAF4/5 | MADS AFFECTING FLOWERING 4/5 |
| MBD9 | Methyl-CpG-binding domain 9 |
| miRNAs | MicroRNAs |
| MMC | megaspore mother cells |
| NHEJ | nonhomologous end-joining |
| Nhp10 | Non-Histone Protein 10 |
| NRP1 | NAP1-RELATED PROTEIN 1 |
| NuA4 | nucleosome acetyltransferase of H4 |
| NuA4-c | NuA4 complex |
| PHD | plant homeodomain |
| PIE1 | PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 |
| PSR | phosphate starvation responses |
| RAD51/RAD54 | RADiation sensitive 51/54 |
| RPM1 | RESISTANCE TO P. SYRINGAE PV MACULICOLA 1 |
| RPP5 | RECOGNITION OF PERONOSPORA PARASITICA 5 |
| Rvb1 | RuvB-like protein 1 |
| RVB1/RIN1 | RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1 |
| Rvb2 | RuvB-like protein 2 |
| RVB2A/B | RuvB-like protein 2A/B |
| SAGA | Spt-Ada-Gcn5-acetyltransferase |
| SANT | Swi3-Ada2-NCoR-TFIIIB |
| SAR | systemic acquired resistance |
| SEF | SERRATED LEAVES AND EARLY FLOWERING |
| SF2 | superfamily 2 |
| SHL 3 | superhelical location 3 |
| SHL2 | superhelical location 2 |
| SHL6 | superhelical location 6 |
| SKIP | SNW/SKI-INTERACTING PROTEIN |
| SOC1 | SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1 |
| SPLs | SQUAMOSA PROMOTER BINDING PROTEIN (SBP)-DOMAIN TRANSCRIPTION FACTORs |
| SRCAP | SNF2-RELATED CBP ACTIVATOR PROTEIN (human) |
| SUF3 | SUPPRESSOR OF FRI 3 |
| SUF4 | SUPPRESSOR OF FRI 4 |
| SVP | SHORT VEGETATIVE PHASE |
| Swc2-6 | SWR complex subunit 2-6 |
| SWI | mating type switching |
| SWR1 | SWi2/snf2-Related 1 |
| SWR1-c | SWR1 complex |
| Taf14 | TATA binding protein-Associated Factor 14 |
| TAP-MS | tandem mass spectrometry |
| TCPs | TEOSINTE BRANCHED 1, CYCLOIDEA AND PCF TRANSCRIPTION FACTORs |
| Tip60 | Tat-interactive protein 60 |
| Tra1 | transfer region 1 |
| TRRAP | transformation/transcription domain-associated protein |
| Yaf9 | YEAST ALL1-FUSED GENE FROM CHROMOSOME 9 |
| YAF9A | YEAST ALL1-FUSED GENE FROM CHROMOSOME 9A |
| YAF9A/B | YEAST ALL1-FUSED GENE FROM CHROMOSOME 9A/B |
| YAF9B | YEAST ALL1-FUSED GENE FROM CHROMOSOME 9B |