Table 5.
Gene Set | Description | # of Genes in Pathway | DEG in Pathway | Enrichment Score | p-Value | |
---|---|---|---|---|---|---|
SE−DEGs | GO:1990841 | promoter-specific chromatin binding | 46 | 2 | 26.787 | 2.48 × 10−3 |
GO:0019199 | transmembrane receptor protein kinase activity | 81 | 2 | 15.212 | 7.51 × 10−3 | |
GO:0019838 | growth factor binding | 138 | 2 | 8.929 | 2.07 × 10−2 | |
GO:0001653 | peptide receptor activity | 149 | 2 | 8.270 | 2.39 × 10−2 | |
GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific | 444 | 3 | 4.163 | 3.36 × 10−2 | |
GO:0008237 | metallopeptidase activity | 185 | 2 | 6.661 | 3.57 × 10−2 | |
GO:1901567 | fatty acid derivative binding | 27 | 1 | 22.819 | 4.30 × 10−2 | |
GO:0017171 | serine hydrolase activity | 208 | 2 | 5.924 | 4.41 × 10−2 | |
GO:0043177 | organic acid binding | 212 | 2 | 5.812 | 4.57 × 10−2 | |
GO:0035035 | histone acetyltransferase binding | 29 | 1 | 21.245 | 4.61 × 10−2 | |
SE−Drug DEGs | GO:0140098 | catalytic activity, acting on RNA | 350 | 3 | 3.912 | 4.02 × 10−2 |
GO:0016701 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | 28 | 1 | 16.299 | 5.96 × 10−2 | |
GO:0060090 | molecular adaptor activity | 194 | 2 | 4.705 | 6.69 × 10−2 | |
GO:0050839 | cell adhesion molecule binding | 478 | 3 | 2.864 | 8.53 × 10−2 | |
GO:1990841 | promoter-specific chromatin binding | 46 | 1 | 9.921 | 9.61 × 10−2 | |
GO:0097110 | scaffold protein binding | 58 | 1 | 7.868 | 1.20 × 10−1 | |
GO:0000049 | tRNA binding | 59 | 1 | 7.735 | 1.22 × 10−1 | |
GO:0070491 | repressing transcription factor binding | 73 | 1 | 6.252 | 1.48 × 10−1 | |
GO:0015631 | tubulin binding | 321 | 2 | 2.843 | 1.55 × 10−1 | |
SE−HIV DEGs | GO:0019865 | immunoglobulin binding | 23 | 3 | 16.235 | 7.93 × 10−4 |
GO:0001228 | DNA−binding transcription activator activity, RNA polymerase II−specific | 444 | 11 | 3.084 | 8.52 × 10−4 | |
GO:0016209 | antioxidant activity | 84 | 4 | 5.927 | 4.63 × 10−3 | |
GO:0070888 | E-box binding | 50 | 3 | 7.468 | 7.50 × 10−3 | |
GO:0016684 | oxidoreductase activity, acting on peroxide as acceptor | 55 | 3 | 6.789 | 9.76 × 10−3 | |
GO:0001227 | DNA-binding transcription repressor activity, RNA polymerase II−specific | 267 | 6 | 2.797 | 2.05 × 10−2 | |
GO:0060589 | nucleoside-triphosphatase regulator activity | 348 | 7 | 2.504 | 2.19 × 10−2 | |
GO:0005496 | steroid binding | 92 | 3 | 4.059 | 3.78 × 10−2 | |
GO:0015026 | coreceptor activity | 43 | 2 | 5.789 | 4.66 × 10−2 |
1 Parameters for the enrichment analysis were as follows: Enrichment method: ORA, organism: hsapiens, enrichment categories: geneontology_Molecular_Function_noRedundant, minimum number of IDs in the category: 5, maximum number of IDs in the category: 2000, FDR method: Benjamini and Hochberg, significance level: Top 10.