. 2019 Sep 6;10(9):686. doi: 10.3390/genes10090686

Table 2.

Some key miRNAs and their targets identified in the integrative regulation network.

miRNA ID ¹	miRNA Sequence	log₂FC	Target Genes or Transcription Factor Genes ²
miR156	TGACAGAAGAGAGTGAGCACA	−5.9	ESP, *SPL2, SPL7, SPL17*
miR167a	TGAAGCTGCCAGCATGATCTA	2.6	CER1, FH2, *WRKY19, ARF17, MNJ7.15*
miR9776	TTGGACGAGGATGTGCAACTG	−3.61	MUS81, CHUP1, *HBP-1b(c38)*
M	UUCCACAGCUUUCUUGAACUG	−3.76	*GRF12, ARF11, RDR3, FDM1, KEG, GRF4, ROPGEF14, GRF10, GRF2, RGA3, TFIID*
N	UUCCACAGCUUUCUUGAACUU	−3.7	TPP2, ICR2, *GRF12, RDR3, FDM1, KEG, GRF4, ROPGEF14, PUB34, GRF10, GRF2, RGA3*
P	UGUUCUGAAGAAACUGUCACC	−2.19	*MKRN*
Q	UUCCACAGCUUUCUUGAACUG	−3.76	*GRF12, ARF11, RDR3, FDM1, KEG, GRF4, ROPGEF14, GRF10, GRF2, RGA3, TFIID*
R	UUCCACAGCUUUCUUGAACUU	−3.7	TPP2, ICR2, *GRF12, RDR3, FDM1, KEG, GRF4, ROPGEF14, PUB34, GRF10, GRF2, RGA3*
S	UUCCACAGCUUUCUUGAACUU	−3.7	TPP2, ICR2, *GRF12, RDR3, FDM1, KEG, GRF4, ROPGEF14, PUB34, GRF10, GRF2*
T	UUCCACAGCUUUCUUGAACUU	−3.7	TPP2, ICR2, *GRF12, RDR3, FDM1, KEG, GRF14, ROPGEF1, PUB34, GRF10, GRF4, GRF2*
U	UUCCACAGCUUUCUUGAACUU	−3.7	TPP2, ICR2, *GRF12, RDR3, FDM1, KEG, GRF4, ROPGEF14, PUB34, GRF10, GRF2, RGA3*
V	UUCCACAGCUUUCUUGAACUG	−3.76	*GRF12, ARF11, RDR3, FDM1, KEG, GRF4, ROPGEF14, GRF10, GRF2, RGA3, TFIID*
Y	UUCCACAGCUUUCUUGAACUG	−3.76	*GRF12, ARF11, RDR3, FDM1, KEG, GRF4, ROPGEF14, GRF10, GRF2, RGA3, TFIID*
AD	CCUGUUGAGCUUGACCCC	2.41	CESA7, CYP71A1, LOGL10, F3L12.7, At1g68400, OSJNBa0006L06.10, GDPDL2, RPL28, At5g67360, At5g16590, T17J13.110, OJ1123_G04.23, F13M22.21, CYP93A2, XTH8, FL2, YSL16, *Os11g0156000, At3g14460, CYP93A3, CYP72A15, HT1, T26J14.10, FL1, TBL38, Ole10, FSD1, MAP65-6, ST3, OsJ_09915, T1D16.11, B1088C09.5, MJG19.3, RBOHC, FAD7, CEBIP, bHLH61, LACS9, T7N9.10, tsf, BAG3, EIL3, F13G24.190, F27K19.170, At4g16820, KCS12, AOC4, APL, F17I23.50, F5D14.23, CYP711A1, Os01g0267300, PAO, KCS11, PUB11, NRPE1, UGT85A23, FSD1, BGLU7, CYP93A1, BGLU28, FSD2, RPP13L4, LECRKS4*
AJ	UCGGACCAGGCUUCAUUCCUU	2.02	*HOX29*
AL	UCGGACCAGGCUUCAUUCCUU	2.02	**HOX29, HOX32**
AM	UCGGACCAGGCUUCAUUCCUU	2.02	**HOX29, HOX32**

¹ Words A-AN in miRNA ID represented different novel miRNAs, the original ID corresponding to these new miRNAs were listed in Table S17. ² The transcription factor genes were highlighted in bold type, target genes were named referring to Swiss-Prot database (https://www.uniprot.org). For short the “tae-“ before the known miRNAs is omitted.