| Strain, strain background (Danio rerio) |
Tg(actb2:myl12.1-EGFP)e2212 |
gift from CP Heisenberg's lab, PMID: 25535919
|
e2212; ZFIN ID: ZDB-ALT-130108-2 |
Behrndt et al., 2012 |
| Strain, strain background (Danio rerio) |
Tg(actb2:GFP-Hsa.UTRN)e116 |
gift from CP Heisenberg's lab, PMID: 25535919
|
e116; ZFIN ID: ZDB-ALT-130206-3 |
Behrndt et al., 2012 |
| Strain, strain background (Danio rerio) |
Tg(actb2:mem-citrine-citrine)hm30 |
Megason lab, PMID: 25303534
|
hm30; ZFIN ID: ZDB-ALT-150209-1 |
Xiong et al., 2014 |
| Strain, strain background (Danio rerio) |
Tg(actb2:mem-citrine)/(actb2:Hsa.H2b-tdTomato)hm32 |
Megason lab, PMID: 27535432
|
hm32; ZFIN ID: ZDB-ALT-161213-1 |
Aguet et al., 2016 |
| Strain, strain background (Danio rerio) |
Tg(actb2:mem-citrine)/(actb2:Hsa.H2b-tdTomato)hm33
|
Megason lab, PMID: 27535432
|
hm33; ZFIN ID: ZDB-ALT-161213-2 |
Aguet et al., 2016 |
| Strain, strain background (Danio rerio) |
Tg(actb2:mem-mcherry2)hm29 |
Megason lab, PMID: 23622240
|
hm29; ZFIN ID: ZDB-ALT-120625-1 |
Xiong et al., 2013 |
| Strain, strain background (Danio rerio) |
AB |
ZIRC, Eugene, OR |
ZFIN ID: ZDB-GENO-960809-7 |
|
| Chemical compound, drug |
Dextran, Texas Red, 3000 MW |
Thermo Fisher Scientific, Waltham, MA |
D-3329 |
|
| Chemical compound, drug |
AlexaFluor 594 |
Thermo Fisher Scientific, Waltham, MA |
A10442 |
|
| Chemical compound, drug |
Oubain |
Sigma Aldrich |
11018-89-6 |
|
| Chemical compound, drug |
Cytochlasin D |
Sigma Aldrich |
C8273 |
|
| Chemical compound, drug |
Niflumic acid |
Sigma Alrich |
4394-00-7 |
|
| Sequence-based reagent |
Morpholino |
Gene tools |
5'-gccttctcctcgtcccattttgctg-3' |
Blasiole et al., 2003 |
| Commercial assay or kit |
mMessage mMachine T7 ULTRA kit |
Thermo Fisher Scientific, Waltham, MA |
AM1345 |
|
| Other |
Board mount pressure sensor |
Honeywell |
HSCDANT001PG3A5 |
pressure probe |
| Other |
glass capillary |
World Precision Instrument |
1B100-6 |
pressure probe |
| Other |
NanoPort Assembly Headless, 10-32 coned for 1/16" |
idex-hs.com |
n-333 |
pressure probe |
| Other |
Sleeve- 1517 Tefzel (ETFE) Tubing, ID 0.04", OD 1/16" |
idex-hs.com |
1517 |
pressure probe |
| Other |
Arduino uno |
sparkfun.com |
R3 |
pressure probe |
| Sequence-based reagent |
pmtb-t7-alpha-bungarotoxin |
addgene, Swinburne et al., 2015
|
Addgene #69542 |
|
| Software, algorithm |
In toto image analysis toolkit (ITIAT) |
Megason lab |
https://wiki.med.harvard.edu/SysBio/Megason/GoFigureImageAnalysis |
|
| Software, algorithm |
Cmake |
|
|
|
| Software, algorithm |
ITK libraries |
|
www.itk.org |
|
| Software, algorithm |
VTK libraries |
|
www.vtk.org |
|
| Software, algorithm |
GoFigure2 |
Megason lab, in preparation |
www.gofigure2.org |
|
| Software, algorithm |
Powercrust |
Amenta et al., 2001 |
https://github.com/krm15/Powercrust |
|
| Software, algorithm |
ACME software |
Mosaliganti et al., 2012 |
|
|
| Software, algorithm |
MATLAB (R2014A) |
www.mathworks.com |
|
|
