Table 1. Number of gene clusters exclusive to each strain (strain-specific), shared with a maximum of one other strain (cloud), shared with more than two strains and less than 95% of strains (shell), shared with more than 95% of strains (soft core), shared with 100% of strains (core), and total of gene clusters in each population.
| Rhizosphere population | Bulk Soil population | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| R9 | R10 | R11 | R14 | R17 | R28 | B4 | B5 | B8 | B9 | B10 | B12 | B13 | B14 | B18 | B19 | B22 | B23 | B24 | |
| Strain-specific | 4 | 18 | 3 | 1 | 5 | 4 | 6 | 187 | 160 | 7 | 336 | 1 | 0 | 166 | 6 | 3 | 288 | 16 | 11 |
| Cloud (< = 2) | 8 | 20 | 7 | 7 | 7 | 6 | 10 | 222 | 187 | 17 | 361 | 49 | 49 | 220 | 14 | 11 | 358 | 280 | 277 |
| Shell (>2) (<95%) | 11 | 6 | 14 | 14 | 16 | 4 | 1023 | 845 | 803 | 844 | 612 | 1027 | 1025 | 839 | 844 | 845 | 572 | 789 | 786 |
| Soft core (>95%) | 5209 | 5204 | 5210 | 5210 | 5210 | 5209 | 4052 | 4033 | 4045 | 4052 | 4015 | 4052 | 4053 | 4049 | 4050 | 4053 | 3963 | 4051 | 4050 |
| Core (100%) | 5197 | 3882 | |||||||||||||||||
| Total | 5273 | 7629 | |||||||||||||||||