Table 1.
Summary of XTHs and EG16 identified in the genome of sweet orange. All XTHs and EG16s are listed.
| Name | CAP ID | Chr. Loci | EST No. | Intron No. | AA No. | MW (Dalton) | PI | Annotation |
|---|---|---|---|---|---|---|---|---|
| CsXTH01 | Cs4g03180 | Cs01:24073183.24074476 + | 10 | 3 | 289 | 33,179.67 | 6.31 | CAP, P, EST |
| CsXTH02 | Cs1g21130 | Cs02:4551552.4552810 − | 5 | 3 | 293 | 34,116.17 | 5.02 | CAP, P, M, EST |
| CsXTH03 | Cs2g07590 | Cs02:11822401.11823543 + | 10 | 3 | 292 | 34,063.58 | 8.64 | CAP, P, EST |
| CsXTH04 | Cs2g14920 | Cs02:14683444.14685405 + | 11 | 3 | 334 | 38,119.86 | 6.56 | CAP, P, EST |
| CsXTH05 | Cs2g17920 | Cs02:19614100.19616010 + | 21 | 3 | 291 | 32,948.97 | 5.69 | CAP, P, EST |
| CsXTH06 | Cs2g22200 | Cs03:12689865.12692080 + | 1 | 3 | 356 | 40,363.55 | 8.86 | CAP, P, EST |
| CsXTH07 | Cs4g03050 | Cs04:1564646.1565870 − | 3 | 2 | 285 | 31,845.51 | 5.85 | CAP, P, EST |
| CsXTH08 | Cs4g03060 | Cs04:1567748.1568823 − | 3 | 2 | 286 | 32,012.71 | 6.21 | CAP, P, EST |
| CsXTH09 | Cs4g03080 | Cs04:1582225.1583396 − | 0 | 2 | 302 | 34,208.81 | 6.32 | CAP, P |
| CsXTH10 | Cs4g03110 | Cs04:1592546.1593612 + | 0 | 2 | 266 | 30,142.09 | 8.61 | CAP, M |
| CsXTH11 | Cs4g03120 | Cs04:1595185.1596639 + | 0 | 3 | 280 | 32,068.14 | 9.17 | CAP, P, M |
| CsXTH12 | Cs4g03130 | Cs04:1599619.1600737 − | 1 | 2 | 285 | 31,743.37 | 5.85 | CAP, P, EST |
| CsXTH13 | Cs4g03140 | Cs04:1602516.1603589 − | 1 | 2 | 286 | 32,074.8 | 6.21 | CAP, P, EST |
| CsXTH14* | Cs4g03145 | Cs04:1603378.1605201 + | 0 | 2 | 122 | N/A | N/A | CAP, M |
| CsXTH15 | Cs4g03150 | Cs04:1607036.1608207 − | 0 | 2 | 302 | 34,218.8 | 6.32 | CAP, P |
| CsXTH16 | Cs3g08950 | Cs04:1620024.1621096 + | 0 | 2 | 291 | 33,183.25 | 8.64 | CAP, P, M |
| CsXTH17 | Cs4g03190 | Cs04:1622154.1623610 + | 0 | 2 | 267 | 30,662.64 | 8.27 | CAP, P |
| CsXTH18 | Cs4g03200 | Cs04:1626153.1627263 + | 10 | 2 | 283 | 32,147.03 | 7.6 | CAP, P, EST |
| CsXTH19 | Cs4g03210 | Cs04:1630852.1631877 + | 1 | 2 | 280 | 31,656.59 | 8.77 | CAP, P, EST |
| CsXTH20 | Cs4g03220 | Cs04:1635451.1637865 + | 2 | 3 | 265 | 30,083.89 | 9.18 | CAP, P, M, EST |
| CsXTH21 | Cs4g03230 | Cs04:1655583.1656783 + | 0 | 2 | 295 | 33,647.46 | 4.91 | CAP, P |
| CsXTH22 | Cs4g03240 | Cs04:1659586.1661426 + | 0 | 3 | 288 | 33,375.61 | 8.62 | CAP, P, M |
| CsXTH23 | Cs4g16330 | Cs04:15956333.15957867 − | 0 | 3 | 291 | 33,295.65 | 9.01 | CAP, P |
| CsXTH24 | Cs5g27840 | Cs05:30304069.30306657 − | 0 | 3 | 288 | 33,413.58 | 7.71 | CAP, P, M |
| CsXTH25 | Cs6g02160 | Cs06:1715203.1716021 − | 0 | 0 | 272 | 31,261.97 | 4.75 | CAP |
| CsXTH26 | Cs6g16990 | Cs06:17595562.17596413 − | 0 | 0 | 283 | 31,807.91 | 7.08 | CAP, P |
| CsXTH27 | Cs7g08460 | Cs07:5311346.5312496 − | 3 | 2 | 314 | 34,804.51 | 8.47 | CAP, P, EST |
| CsXTH28 | Cs8g03550 | Cs08:1713946.1715132 − | 0 | 3 | 304 | 35,052.57 | 8.78 | CAP, P |
| CsXTH29 | Cs8g12020 | Cs08:13532542.13534098 + | 3 | 2 | 293 | 34,239.08 | 9.03 | CAP, P, M, EST |
| CsXTH30 | Cs8g15720 | Cs08:18866226.18867848 − | 2 | 3 | 296 | 33,394.4 | 6.49 | CAP, P, EST |
| CsXTH31 | orange1.1t00547 | CsUn:6505748.6506605 − | 0 | 0 | 285 | 32,501.44 | 5.65 | CAP, P |
| CsXTH32 | orange1.1t00876 | CsUn:12458388.12460216 + | 0 | 3 | 293 | 33,986.6 | 9.13 | CAP, P, M |
| CsXTH33 | orange1.1t02385 | CsUn:35972640.35973816 + | 16 | 2 | 288 | 33,082.38 | 9.11 | CAP, P, M, EST |
| CsXTH34 | orange1.1t02575 | CsUn:39382705.39383552 + | 0 | 3 | 282 | 33,157.23 | 7.76 | CAP, P, M |
| CsEG16 | orange1.1t00297 | CsUn:4793451.4794742 + | 0 | 1 | 215 | 24,208.07 | 4.92 | CAP, P |
AA, amino acid; MW, molecular weight; PI, isoelectric point; *Pseudogene. +/−, Directions of each gene on chromosomes; P, Prediction by Phytozome; CAP, Prediction by Citrus sinensis annotation project; M, Manual correction; EST, Genes with EST hits; XTH, xyloglucan endotransglucosylase/hydrolase.