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. 2019 Sep 27;10:2243. doi: 10.3389/fmicb.2019.02243

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Copyright © 2019 Jaramillo-Torres, Rawling, Rodiles, Mikalsen, Johansen, Tinsley, Forberg, Aasum, Castex and Merrifield.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Taxonomic differences in the distal intestinal microbiota from mucosa in control samples during FW and SW stages according to LEfSe analysis. The analysis was carried out with the relative abundance at the genus level. The stage (FW and SW) was treated as Class. (A) A circular cladogram is representing the significant enriched OTUs between FW (red) or SW (green) groups. No significantly different OTUs are represented in yellow. The diameter of each dot is proportional to its effect size. (B) Relative abundance (expressed from 0 to 1) of enriched taxa according to LEfSe (only OTUs at class or phylum level were plotted). (C) LDA, differentially enriched OTUs are arranged in descending order according to LDA score.