Table 2.
Pairwise LOD scores at multiple markers in 2q33.3-2q35 in full PKSLI05 and branch-d under autosomal recessive inheritance model
| Chr. | SNP ID | hg19 position (Mb) | LOD score PKSLI05—branch-d—complete penetrance | LOD score PKSLI05 —branch-d—reduced penetrance (0.7) | LOD score PKSLI05 full—complete penetrance | LOD score PKSLI05 full reduced penetrance (0.7) |
|---|---|---|---|---|---|---|
| 2 | rs717973 | 207.97 | −1.8147 | −1.8186 | −4.5245 | −4.5245 |
| 2 | rs1446596 | 210.29 | 1.803 | 1.7952 | 1.8599 | 1.8521 |
| 2 | rs10208979 | 210.34 | 1.803 | 1.7952 | 1.3911 | 1.3834 |
| 2 | rs731953 | 210.68 | 3.2821 | 3.2743 | −3.0983 | −3.106 |
| 2 | rs1396828 | 211.05 | 1.803 | 1.7952 | 0.6506 | 0.6429 |
| 2 | rs4356603 | 211.51 | −0.3228 | −0.3268 | 0.1054 | 0.1054 |
| 2 | rs714393 | 212.70 | 1.7768 | 1.7768 | −1.8314 | −1.8314 |
| 2 | rs2054615 | 213.48 | 1.803 | 1.7952 | 2.4883 | – |
| 2 | rs13420690 | 215.24 | −0.3689 | −0.3585 | −0.8236 | −0.8306 |
| 2 | rs2229571 | 215.65 | −1.8147 | −1.8186 | −0.0809 | −0.0809 |
| 2 | rs1880586 | 216.20 | 1.803 | 1.7952 | 2.0291 | 2.0212 |
| 2 | rs921970 | 219.21 | 1.803 | 1.7952 | 1.633 | 1.6252 |
| 2 | rs9076 | 219.21 | 1.803 | 1.7952 | 1.5919 | 1.5842 |
| 2 | rs585185 | 219.46 | 1.7768 | 1.7768 | −2.2111 | −2.2111 |
| 2 | rs1554622 | 219.61 | 3.2821 | 3.2743 | −0.1944 | −0.2022 |
| 2 | rs1109867 | 220.08 | −1.8147 | −1.8186 | −2.192 | −2.192 |
hg19 = Human Genome Assembly 19 (Feb. 2009), Mb = Megabases