Table 4. Gene sets enriched in the high-expression phenotype.

Gene set name	NES	NOM p-val	FDR q-val
KEGG_APOPTOSIS	1.970	0.002	0.005
KEGG_B_CELL_RECEPTOR_SIGNALING_PATHWAY	2.069	0.000	0.003
KEGG_CALCIUM_SIGNALING_PATHWAY	2.021	0.000	0.004
KEGG_CHEMOKINE_SIGNALING_PATHWAY	2.145	0.000	0.001
KEGG_JAK_STAT_SIGNALING_PATHWAY	2.242	0.000	0.000
KEGG_MAPK_SIGNALING_PATHWAY	1.997	0.002	0.004
KEGG_P53_SIGNALING_PATHWAY	2.022	0.002	0.004
KEGG_PATHWAYS_IN_CANCER	2.075	0.004	0.003
KEGG_T_CELL_RECEPTOR_SIGNALING_PATHWAY	1.973	0.002	0.005
KEGG_TOLL_LIKE_RECEPTOR_SIGNALING_PATHWAY	2.007	0.002	0.004
KEGG_VEGF_SIGNALING_PATHWAY	1.966	0.002	0.005
KEGG_WNT_SIGNALING_PATHWAY	2.009	0.004	0.004

Notes.

NES

normalized enrichment score

NOM

nominal;

FDR

false discovery rate

Gene sets with NOM p-val <0.05 and FDR q-val <0.25 were considered significant.