Table 4. Repetitive content of the newly sequenced G. turneri and G. raimondii genomes, and the previously published G. raimondii (Paterson et al. 2012). No LINE or SINE elements were detected. The genome size of G. turneri is 910 Mb and G. raimondii is 880 Mb.
G. turneri | G. raimondii | G. raimondii (Paterson et al. 2012) | |||||||
---|---|---|---|---|---|---|---|---|---|
Family | Fragments | Copies | Total (Mb) | Fragments | Copies | Total (Mb) | Fragments | Copies | Total (Mb) |
DNA | 20,199 | 12,453 | 18.28 | 22,503 | 13,764 | 20.63 | 23,474 | 13,969 | 20.27 |
CMC/EnSpm | 2 | 1 | 0.00 | 2 | 2 | 0.00 | 14 | 9 | 0.00 |
EnSpm/CACTA | 2,443 | 1,385 | 3.92 | 3,172 | 1,864 | 5.24 | 3,648 | 1,878 | 4.87 |
Harbinger | 30 | 22 | 0.01 | 58 | 41 | 0.03 | 42 | 28 | 0.02 |
hAT | 2,725 | 1,712 | 1.01 | 3,079 | 1,895 | 1.01 | 3,209 | 1,966 | 1.03 |
L1 | 1,255 | 638 | 1.56 | 1,256 | 618 | 1.49 | 1,290 | 633 | 1.54 |
Mariner/Tc1 | 98 | 51 | 0.07 | 76 | 40 | 0.06 | 84 | 43 | 0.06 |
MuDR | 13,590 | 8,592 | 11.71 | 14,828 | 9,280 | 12.79 | 15,145 | 9,381 | 12.73 |
MULE-MuDR | 52 | 50 | 0.01 | 21 | 19 | 0.00 | 25 | 23 | 0.00 |
PIF-Harbinger | 4 | 2 | 0.00 | 11 | 5 | 0.00 | 17 | 8 | 0.01 |
LTR | 338,644 | 199,672 | 277.72 | 325,760 | 190,122 | 264.75 | 336,908 | 196,564 | 267.24 |
LTR | 224 | 216 | 0.02 | 214 | 206 | 0.02 | 311 | 304 | 0.03 |
Copia | 48,098 | 28,294 | 45.51 | 48,911 | 29,032 | 45.29 | 50,993 | 29,965 | 45.72 |
Gypsy | 290,322 | 171,162 | 232.19 | 276,635 | 160,884 | 219.44 | 285,604 | 166,295 | 221.49 |
Total | 358,843 | 212,125 | 296.00 | 348,263 | 203,886 | 285.38 | 360,382 | 210,533 | 287.51 |