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. 2019 Jun 24;16(10):1377–1385. doi: 10.1080/15476286.2019.1630797

Figure 2.

Figure 2.

Analysis of the folding of Kt-7 induced by addition of Mg2+ ions, analysed by steady-state FRET. The sequence of the unmodified RNA is shown at the top; four variants in which a chosen adenine was replaced by N6-methyladenine were also prepared. Each species is labelled at the 5ʹ-termini by fluorescein (flu, donor) and Cy-3 (Cy3, acceptor) fluorophores. The efficiency of energy transfer (EFRET) is plotted as a functionofMg2+ concentration for each species. Where possible the data have been fitted to a two-state model of RNA folding Equation (1).

(a). Unmodified (filled circles) and L3-methylated (open circles) Kt-7. (b). Kt-7 with A1n replaced by N6-methyladenine. This species failed to fold at any concentration of Mg2+. (c). Kt-7 with A2b replaced by N6-methyladenine. (d). Kt-7 with A3b replaced by N6-methyladenine.