Table 1.
Known sRNAs implicated in desiccation stress response in Salmonella enterica. Previous characterisations and expressions in three sample conditions (stationary phase growth, 24 hr desiccated, and 72 hr desiccated) are indicated in transcripts per million.
| sRNA | Previous Characterization | Exp. In Stationary | Exp. In 24-hr Desiccation | Exp. In 72-hr Desiccation |
|---|---|---|---|---|
| RyhB‑1 | Ellermeier & Slauch, 2008; Padalon-Brauch et al., 2008 | 27.9 | 0.0 | 110.3 |
| STnc3830 | Ramachandran et al., 2012 | 6.5 | 0.0 | 115.1 |
| IsrQ | Padalon-Brauch et al., 2008 | 15.9 | 0.0 | 157.6 |
| sRNA697722 | Amin et al., 2016 | 15.9 | 505.4 | 282.4 |
| sRNA1318601 | Amin et al., 2016 | 69.0 | 1865.0 | 430.6 |
| sRNA1170414 | Amin et al., 2016 | 33.9 | 595.6 | 134.1 |
| STnc3150 | Ramachandran et al., 2012 | 137.0 | 1900.5 | 655.2 |
| STnc3420 | Kroger et al., 2013 | 80.6 | 923.8 | 265.5 |
| tpke11 | Rivas et al., 2001 | 63.0 | 707.4 | 103.8 |
| IsrL | Padalon-Brauch et al., 2008 | 614.4 | 6679.4 | 3233.8 |
| STnc3680 | Kroger et al., 2013 | 74.4 | 10.9 | 117.7 |
| STnc3240 | Kroger et al., 2013 | 1001.6 | 9779.0 | 3160.0 |
| MicC | Pfeiffer et al., 2009 | 13.7 | 83.9 | 129.6 |
| C0664 | Hershberg et al., 2003 | 24.8 | 12.1 | 114.4 |
| STnc3500 | Ramachandran et al., 2012 | 124.3 | 1159.3 | 368.4 |
| STnc3920 | Kroger et al., 2013 | 17.6 | 47.5 | 160.5 |
| STnc380 | Pfeiffer et al., 2007; Sittka et al., 2008 | 16.5 | 60.5 | 130.8 |
| STnc790 | Sittka et al., 2009 | 1964.0 | 15245.0 | 2846.0 |
| SroC | Vogel et al., 2003 | 17043.7 | 129573.2 | 40843.5 |
| STnc1590 | Kröger et al., 2012 | 508.5 | 3833.2 | 1477.7 |
| STnc1690 | Kröger et al., 2012 | 579.2 | 4361.7 | 978.6 |
| STnc200 | Pfeiffer et al., 2007; Sittka et al., 2008 | 142.4 | 1022.9 | 368.4 |
| sRNA294324 | Amin et al., 2016 | 35.6 | 142.1 | 249.4 |
| SraA | Argaman et al., 2001 | 102.9 | 720.7 | 231.0 |
| STnc3310 | Kroger et al., 2013 | 3845.6 | 26697.9 | 7451.2 |
| STnc4120 | Kroger et al., 2013 | 425.0 | 2814.5 | 569.4 |
| STnc1540 | Kröger et al., 2012 | 65.1 | 408.5 | 275.8 |
| sRNA10 | Sridhar et al. 2010 | 384.5 | 2314.6 | 643.6 |
| STnc1460 | Kröger et al., 2012 | 2580.2 | 15380.1 | 12827.6 |
| STnc1420 | Kröger et al., 2012 | 494.9 | 2674.8 | 1461.3 |
| STnc1300 | Kröger et al., 2012 | 47.1 | 28.2 | 152.4 |
| STnc1400 | Kröger et al., 2012 | 59.5 | 166.4 | 321.0 |
| RyfA | Wassarman et al., 2001 | 3993.8 | 21215.8 | 20672.9 |
| STnc980 | Kroger et al., 2013 | 3168.7 | 15643.5 | 6274.0 |
| STnc4160 | Kroger et al., 2013 | 353.0 | 102.7 | 504.4 |
| STnc1030 | Kroger et al., 2013 | 23607.0 | 113313.5 | 47610.3 |
| sRNA3405375 | Amin et al., 2016 | 40.6 | 193.1 | 100.3 |
| STnc4040 | Kroger et al., 2013 | 31.2 | 84.3 | 142.4 |
| sRNA3551252 | Amin et al., 2016 | 961.8 | 4237.3 | 1241.5 |
| STnc3110 | Kroger et al., 2013 | 829.7 | 3632.0 | 1157.6 |
| RyeF | Zhang et al., 2003; Chao et al., 2012, Kröger et al., 2012 | 227116.3 | 979720.1 | 306817.5 |
| STnc3850 | Kroger et al., 2013 | 24.7 | 61.9 | 104.5 |
| STnc1650 | Kröger et al., 2012 | 1422.4 | 6009.0 | 1826.6 |
| STnc4220 | Kroger et al., 2013 | 50.1 | 206.4 | 130.1 |
| STnc4250 | Kroger et al., 2013 | 228.3 | 933.6 | 530.9 |
| STnc4190 | Kroger et al., 2013 | 37.2 | 25.1 | 101.8 |
| STnc3640 | Ramachandran et al., 2012 | 243.7 | 116.1 | 463.5 |
| SgrS | Wadler & Vanderpool, 2009; Papenfort et al., 2012; Papenfort et al., 2013 | 9469.1 | 35888.7 | 10789.4 |
| STnc3180 | Kroger et al., 2013 | 106.5 | 371.7 | 162.0 |
| STnc3290 | Kroger et al., 2013 | 733.9 | 2456.0 | 1394.2 |
| STnc770 | Sittka et al., 2009 | 688.8 | 2281.0 | 819.2 |
| sRNA924744 | Amin et al., 2016 | 11361.8 | 36145.1 | 12879.3 |
| STnc3530 | Ramachandran et al., 2012 | 451.8 | 1428.7 | 1046.8 |
| STnc3220 | Ramachandran et al., 2012 | 201.1 | 590.5 | 611.7 |
| STnc1290 | Kröger et al., 2012 | 372.1 | 556.2 | 1108.0 |
| STnc3460 | Kroger et al., 2013 | 92.7 | 203.6 | 274.9 |
| CsrB | Fortune et al., 2006 | 500191.3 | 224632.9 | 653475.2 |
| RygC | Zhang et al., 2003; Fozo et al., 2008; Rudd, 1999 | 4720.3 | 13314.3 | 5186.2 |
| SraL | Argaman et al., 2001 | 17867.1 | 49604.7 | 46410.3 |
| STnc2010 | Chao et al., 2012; Kröger et al., 2012 | 569.8 | 1552.2 | 882.6 |
| STnc3480 | Kroger et al., 2013 | 101.5 | 275.4 | 182.6 |
| STnc4080 | Kroger et al., 2013 | 119.1 | 313.7 | 197.7 |
| STnc1110 | Kröger et al., 2012 | 6793.7 | 14600.4 | 7425.0 |
| AmgR | Lee & Groisman, 2010 | 1171.8 | 771.2 | 559.0 |
| STnc760 | Sittka et al., 2009 | 391.4 | 603.3 | 283.9 |
| FnrS | Boysen et al., 2010; Durand & Storz, 2010 | 1703.3 | 2314.2 | 1070.7 |
| STnc1270 | Kröger et al., 2012 | 1558.4 | 2263.2 | 1024.3 |
| STnc1830 | Kroger et al., 2013 | 286.9 | 427.8 | 192.6 |
| STnc1760 | Ramachandran et al., 2012 | 389.1 | 660.0 | 297.1 |
| STnc1710 | Ramachandran et al., 2012 | 795.3 | 1708.6 | 756.5 |
| STnc780 | Sittka et al., 2009 | 4740.7 | 5332.0 | 2319.6 |
| GlmZ | Urban & Vogel, 2008 | 95171.3 | 92652.8 | 40338.1 |
| t44 | Rivas et al., 2001 | 1833.4 | 1908.9 | 685.8 |
| GcvB | Sharma et al., 2007 | 51769.7 | 60666.1 | 21402.8 |
| STnc3080 | Kroger et al., 2013 | 180.7 | 396.6 | 133.9 |
| STnc2090 | Chao et al., 2012 | 56052.7 | 99725.5 | 32507.6 |
| STnc1480 | Kröger et al., 2012 | 14667.9 | 27422.5 | 8710.1 |
| STnc1330 | Kröger et al., 2012 | 3604.2 | 7379.1 | 2291.1 |
| STnc1990 | Ramachandran et al., 2012 | 424.4 | 643.8 | 197.6 |
| sRNA176086 | Amin et al., 2016 | 225.7 | 445.3 | 135.8 |
| STnc3010 | Ramachandran et al., 2012 | 233.9 | 70.0 | 115.6 |
| STnc1130 | Kröger et al., 2012 | 519.4 | 1195.9 | 350.5 |
| RybA | Wassarman et al., 2001 | 1906.0 | 4460.3 | 1255.7 |
| IsrI | Padalon-Brauch et al., 2008 | 13155.9 | 41853.4 | 11609.5 |
| STnc3990 | Ramachandran et al., 2012 | 676.9 | 350.1 | 178.6 |
| STnc4150 | Kroger et al., 2013 | 744.3 | 281.5 | 176.5 |
| STnc700 | Sittka et al., 2009 | 9605.0 | 3139.9 | 2238.6 |
| sRNA4130247 | Amin et al., 2016 | 365.5 | 82.7 | 134.1 |
| STnc3760 | Ramachandran et al., 2012 | 137.0 | 311.2 | 70.1 |
| OxyS | Altuvia et al., 1997; Padalon-Brauch et al., 2008 | 97.6 | 208.7 | 44.5 |
| SraB | Argaman et al., 2002 | 494.4 | 731.5 | 145.8 |
| STnc4200 | Ramachandran et al., 2012 | 411.8 | 1056.6 | 176.5 |
| sRNA2759412 | Amin et al., 2016 | 229.3 | 736.2 | 121.7 |
| STnc3700 | Ramachandran et al., 2012 | 595.4 | 1719.2 | 270.4 |
| sRNA1799950 | Amin et al., 2016 | 170.6 | 631.5 | 99.2 |
| STnc1170 | Kröger et al., 2012 | 626.1 | 1482.3 | 218.4 |
| sRNA1548865 | Amin et al., 2016 | 238.8 | 675.1 | 58.2 |
| sRNA1253515 | Amin et al., 2016 | 71.6 | 496.4 | 22.3 |
| sRNA1888744 | Amin et al., 2016 | 17.7 | 186.7 | 0.0 |
| MicA | Papenfort et al., 2006; Bossi & Figueroa-Bossi, 2007 | 20.1 | 106.0 | 0.0 |
| DsrA | Majdalani et al., 2001 | 37.6 | 135.2 | 0.0 |
| STnc4070 | Kroger et al., 2013 | 48.1 | 184.8 | 0.0 |