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. 2019 Oct 7;19:415. doi: 10.1186/s12870-019-2011-8

Table 2.

Important genes and their predicted functions in the internode elongation of fruiting branches in cotton

Gene ID L-1_fpkm L-2_fpkm L-3_fpkm X-1_fpkm X-2_fpkm X-3_fpkm Description Predicted Function Reference
Gh_A03G0871 140.59 123.31 174.71 288.19 307.84 312.05 Sphingoid base hydroxylase 2 Inhibition of growth, Promote apoptosis Chen M et al., 2008 [13]
Gh_D02G1254 51.05 42.47 73.17 193.67 193.92 168.60 Sphingoid base hydroxylase 2 Inhibition of growth, Promote apoptosis Chen M et al., 2008 [13]
Gh_D02G1253 26.06 4.56 3.80 64.51 24.95 22.93 Sphingoid base hydroxylase 2 Inhibition of growth, Promote apoptosis Chen M et al., 2008 [13]
Gh_D09G0602 56.28 47.55 51.27 109.19 97.56 71.71 Kinase-13A Inhibition of cell expansion Fujikura U et al., 2014 [14]
Gh_D09G0602 56.28 47.55 51.27 109.19 97.56 71.71 Kinase-13A Inhibition of cell cell size Li YJ et al., 2017 [15]
Gh_A11G3137 4.98 2.37 7.81 10.01 10.12 3.79 Protein-tyrosine phosphatase-like, PTPLA Inhibition of cell division Bach L et al., 2008 [16]
Gh_A05G1579 23.01 28.32 29.73 24.85 28.62 57.19 Cinnamyl alcohol dehydrogenase 9 Lignin accumulation Mansell RL et al., 2014 [17]
Gh_A10G1518 14.25 16.39 79.99 12.18 20.41 209.74 Chitinase-like protein 2 Accelerate secondary metabolism Hossain MA et al., 2010 [18]
Gh_D10G1769 11.60 13.33 67.11 7.79 14.97 144.79 Chitinase-like protein 2 Accelerate secondary metabolism Hossain MA et al., 2010 [18]
Gh_A11G2936 14.46 20.28 55.22 7.95 9.54 40.63 Laccase/diphenol oxidase family protein Promotion of lignin decomposition Berthet S et al., 2011 [19]
Gh_D03G1128 19.76 29.29 52.91 20.38 28.83 47.27 Laccase/diphenol oxidase family protein Promotion of lignin decomposition Zhao Q et al., 2013 [20]
Gh_D09G2057 21.45 62.35 73.01 33.54 70.74 107.94 Malectin/receptor-like protein Kinase family protein Protoplast alkalization Barbez E et al., 2017 [21]
Gh_D10G0981 237.30 215.92 111.36 116.78 90.66 36.42 Histone superfamily protein Promoting cell division Günesdogan U et al., 2014 [22]
Gh_A08G2114 202.08 170.28 81.50 94.56 62.85 30.06 Histone superfamily protein Promoting cell proliferation Günesdogan U et al., 2014 [22]
Gh_A13G0050 127.76 214.03 257.34 121.15 156.57 118.64 Expansin A8 Promote cell loosening and expansion Nardi CF et al., 2014 [23]
Gh_D13G0060 196.61 288.97 352.52 199.21 232.59 172.40 Expansin A8 Promote cell loosening and expansion Nardi CF et al., 2014 [23]
Gh_D01G0964 47.14 51.81 75.14 36.00 37.19 32.03 Walls Are Thin 1 Promoting cell elongation Ranocha P et al., 2010 [24]
Gh_A01G0922 36.58 39.66 58.01 24.81 25.32 28.10 Walls Are Thin 1 Promoting cell elongation Ranocha P et al., 2010 [24]
Gh_A03G1432 102.22 86.74 92.84 53.86 58.35 44.55 Xyloglucan endotransglucosylase/hydrolase 9 Promoting cell proliferation and elongation Shin YK et al., 2006 [25]
Gh_A13G0500 39.81 26.30 26.26 13.99 14.66 12.00 Xyloglucan endotransglucosylase/hydrolase 9 Promoting cell proliferation and elongation Shin YK et al., 2006 [25]