Table 2.
Open-source chemogenomic data-driven DTI prediction algorithms based on the benchmark data set
| No. | Algorithm | Open-access link | Year | Reference |
|---|---|---|---|---|
| 1 | BLM | http://cbio.mines-paristech.fr/∼yyamanishi/bipartitelocal/ | 2009 | [47] |
| 2 | KronRLS | http://cs.ru.nl/∼tvanlaarhoven/drugtarget2011/ | 2011 | [55] |
| 3 | KBMF2K | http://users.ics.aalto.fi/gonen/bioinfo12.php | 2012 | [59] |
| 4 | DTHybrid | http://alpha.dmi.unict.it/dtweb/dthybrid.php | 2013 | [50] |
| 5 | KronRLSWNN | http://cs.ru.nl/∼tvanlaarhoven/drugtarget2013/ | 2013 | [57] |
| 6 | SCMLKNN | http://web.hku.hk/∼liym1018/projects/drug/drug.html or http://www.bmlnwpu.org/us/tools/PredictingDTI_S2/METHODS.html | 2015 | [63] |
| 7 | RLSKF | https://github.com/minghao2016/RLS-KF | 2016 | [53] |
| 8 | KronRLSMKL | http://www.cin.ufpe.br/∼acan/kronrlsmkl/ | 2016 | [56] |
| 9 | KronRLSWNNS | https://github.com/hkmztrk/SMILESbasedSimilarityKernels | 2016 | [58] |
| 10 | NRLMF | https://github.com/stephenliu0423/PyDTI | 2016 | [49] |
| 11 | COSINE | http://bioinfo.cs.uni.edu/COSINE.html | 2016 | [60] |
| 12 | DNILMF | https://github.com/minghao2016/DNILMF | 2017 | [48] |