Table 3.
Ontologies used in this benchmark with name, acronym, number of triples and reference
| Name | Acronym | # Triples |
|---|---|---|
| Chemical Entities of Biological Interest Ontology [37] | ChEBI | 8187078 |
| Cell Ontology [38] | CL | 69796 |
| Human Disease Ontology [39] | DOID | 203125 |
| The Drug Ontology [40] | DRON | 138898 |
| EMBRACE Data And Methods [41] | EDAM | 33300 |
| Experimental Factor Ontology [42] | EFO | 469954 |
| Foundational Model of Anatomy [43] | FMA | 612982 |
| Gene Ontology [4] | GO | 1575776 |
| Human Phenotype Ontology [44] | HP | 350017 |
| Mouse Adult Gross Anatomy Ontology [45] | MA | 25523 |
| Mammalian Phenotype Ontology [46] | MP | 335821 |
| Mouse Pathology Ontology [47] | MPATH | 11992 |
| Neuro Behavior Ontology [48] | NBO | 10376 |
| National Cancer Institute Thesaurus [49] | NCIT | 5784846 |
| Ontology of Adverse Events [50] | OAE | 54334 |
| Ontology of Genes and Genomes [51] | OGG | 1211539 |
| Phenotypic Quality Ontology [52] | PATO | 31644 |
| Plant Ontology [53] | PO | 59932 |
| Uber Anatomy Ontology [54] | UBERON | 690529 |
| Vertebrate Trait Ontology [55] | VT | 44183 |
| Caenorhabditis elegans Phenotype Vocabulary [56] | WPhenotype | 31991 |
| Xenopus Anatomy and Development Ontology [57] | XAO | 40611 |
| Zebrafish Anatomy and Development Ontology [58] | ZFA | 82964 |