Table 2. Twenty-three QTL associated with flowering time detected in the BRIDG6 population.
QTLa | LD groupb | Maximum -log(p)c | Location of most significant SNP (cM) | Location of most significant SNP (bp) | Number of significant SNPd | Total number of SNP in QTL region (5 Mbp)e | Max. Families segregatingf | Min. Families Segregatingg |
---|---|---|---|---|---|---|---|---|
1_01 | A | 9.2 | 50.22 | 427,905,991 | 1 | 13 | 26 | 26 |
1_02 | B | 13.42 | 88.84 | 524,189,956 | 1 | 50 | 22 | 22 |
2_01 | C | 142.43 | 20.01 | 27,204,805 | 102 | 268 | 47 | 11 |
2_02 | D | 6.03 | 43.17 | 60,578,410 | 1 | 21 | 44 | 44 |
2_03 | E | 7.98 | 57.86 | 181,205,852 | 2 | 6 | 36 | 17 |
2_04 | F | 7.75 | 58.01 | 187,898,571 | 1 | 1 | 24 | 24 |
2_05 | E | 5.88 | 58.01 | 197,287,292 | 2 | 11 | 42 | 29 |
2_06 | E | 14.27 | 58.8 | 241,566,109 | 4 | 9 | 31 | 23 |
2_07 | EG | 10.36 | 58.8 | 257,828,128 | 2 | 4 | 37 | 13 |
2_08 | EH | 6.47 | 58.8 | 403,342,684 | 1 | 7 | 38 | 38 |
2_09 | I | 7.9 | 58.8 | 437,926,040 | 1 | 6 | 22 | 22 |
2_10 | J | 10.18 | 58.8 | 486,598,181 | 1 | 1 | 18 | 18 |
2_11 | K | 17.17 | 59.61 | 493,756,332 | 1 | 2 | 14 | 14 |
2_12 | K | 10.16 | 60.2 | 521,775,169 | 2 | 6 | 38 | 28 |
2_13 | K | 20.95 | 60.2 | 549,097,349 | 10 | 14 | 30 | 17 |
2_14 | K | 8.17 | 60.2 | 564,309,170 | 2 | 2 | 33 | 29 |
2_15 | L | 8.7 | 62.04 | 582,332,455 | 1 | 4 | 15 | 15 |
2_16 | M | 6.66 | 58.01 | 763,099,837 | 1 | 76 | 37 | 37 |
3_01 | N | 23.19 | 51.71 | 123,315,601 | 3 | 9 | 40 | 16 |
5_01 | O | 5.49 | 50.04 | 403,946,354 | 1 | 10 | 30 | 30 |
5_02 | P | 7.31 | 144.97 | 630,784,439 | 1 | 41 | 47 | 47 |
7_01 | Q | 32.44 | 34.85 | 39,192,808 | 41 | 197 | 41 | 13 |
7_02 | R | 44.56 | 131.1 | 646,266,549 | 2 | 99 | 42 | 13 |
Maximum–log(P-value) for any SNP in the QTL.
Flowering time QTL. Association determined by FDR threshold >.0.05.
QTL with the same letter include SNPs in high LD (r > 0.7)
Number of significant SNP in the QTL.
Total number of SNPs within 5 Mbp of QTL.
Maximum number of families for which a significant SNP in the QTL segregates.
Minimum number of families for which a significant SNP in the QTL segregates.