Key resources table.
| Reagent type (species) or resource |
Designation | Source or reference | Identifiers | Additional information |
|
|---|---|---|---|---|---|
| Genetic reagent(Danio rerio) | Tg(KalTA4u508) u508Tg | This study | Transgene | ||
| Genetic reagent(Danio rerio) | Tg(UAS:jGCaMP7f)u341Tg | This study | Transgene | ||
| Genetic reagent(Danio rerio) | Tg(UAS:CoChR-tdTomato)u332Tg | This study | ZFIN ID: ZDB-ALT-190226–4 |
Transgene | |
| Genetic reagent (Danio rerio) |
Tg(elavl3:H2B-GCaMP6s)jf5Tg | PMID: 25068735 | ZFIN ID: ZDB-ALT-141023–2 |
Vladimirov et al., 2014 | |
| Genetic reagent (Danio rerio) |
Tg(atoh7:gapRFP) cu2Tg | PMID: 17147778 | ZFIN ID: ZDB-ALT-070129–2 |
Zolessi et al., 2006 | |
| Genetic reagent (Danio rerio) |
Tg(UAS:GCaMP6f, cryaa:mCherry)icm06Tg | PMID: 28623664 | ZFIN ID: ZDB-ALT-160119–5 |
Knafo et al. (2017) | |
| Genetic reagent(Danio rerio) | Tg(UAS-E1b:NfsB-mCherry)jh17Tg | PMID: 17335798 | ZFIN ID: ZDB-ALT-110222–4 |
Davison et al. (2007) | |
| Genetic reagent(Danio rerio) | TgBAC(slc17a6b:loxP-DsRed-loxP-GFP)nns14Tg | PMID: 21199937 | ZFIN ID: ZDB-ALT-110413–5 |
Koyama et al. (2011) | |
| Genetic reagent (Danio rerio) | Tg(UAS:RFP)tpl2Tg | PMID: 24179142 | ZFIN ID: ZDB-ALT-131119–25 |
Auer et al. (2014) | |
| Genetic reagent(Danio rerio) | Tg(atoh7:GFP)rw021Tg | PMID: 12702661 | ZFIN ID: ZDB-ALT-050627–2 |
Masai et al. (2003) | |
| Genetic reagent(Danio rerio) | Tg(Cau.Tuba1:c3paGFP)a7437Tg | PMID: 22704987 | ZFIN ID: ZDB-ALT-120919–1 |
Bianco et al. (2012) | |
| Genetic reagent (Danio rerio) | Tg(elavl3:ITETA-PTET:Cr.Cop4-YFP)fmi2Tg | PMID: 23641200 | ZFIN ID: ZDB-ALT-120209–3 |
Fajardo et al. (2013) | |
| Genetic reagent (Danio rerio) |
Tg(gata2a:GFP)pku2Et | PMID: 18164283 | ZFIN ID: ZDB-ALT-080514–1 |
Wen et al., 2008 | |
| Genetic reagent (Danio rerio) |
atoh7th241 | PMID: 11430806 | ZFIN ID: ZDB-ALT-980203–363 |
Kay et al. (2001) | |
| Recombinant DNA reagent | UAS:CoChR-tdTomato | This study | Plasmid | ||
| Sequence-based reagent | CoChR_fw PCR primer |
This study | CTCAGCGTAAAGCCACCATGCTGGGAAACG | ||
| Sequence-based reagent | CoChR_rev PCR primer |
This study | TACTACCGGTGCCGCCACTGT | ||
| Sequence-based reagent | CoChR_tdT_fw PCR primer |
This study | ACAGTGGCGGCACCGGTAGTA | ||
| Sequence-based reagent | tdT_rev PCR primer |
This study | CTAGTCTCGAGATCTCCATGTTTACTTATACAGCTCATCCATGCC | ||
| Sequence-based reagent | UAS_jGCaMP7_fw PCR primer |
This study | CGTAAAGCCACCATGGGTTCTCATC | ||
| Sequence-based reagent | UAS_jGCaMP7_rev PCR primer |
This study | CTCGAGATCTCCATGTTTACTTCGCTGTCATCATTTGTACAAAC | ||
| Sequence-based reagent | pvalb_fw PCR primer |
This study | GGGGACAAGTTTGTACAAAAAAGCAGGCTGGATGGTGGGCCAAATCAAAGGCTAC | ||
| Sequence-based reagent | pvalb_rev PCR primer |
This study | GGGGACCACTTTGTACAAGAAAGCTGGGTGGAACGAGACCGGCAACACACAG | ||
| Antibody | Rabbit polyclonal anti-GFP; TP401 | AMS Biotechnology | RRID: AB_10890443 | 1:1000 | |
| Antibody | Mouse monoclonalanti-44/42 MAPK (Erk1/2); 4696 | Cell Signaling Technology | RRID: AB_390780 | 1:500 | |
| Antibody | Rat monoclonal anti-GFP; 04404–26 | Nacalai Tesque | RRID: AB_10013361 | 1:1000 | |
| Antibody | Rabbit polyclonal anti-RFP/DsRed; PM005 | MBL International | RRID: AB_591279 | 1:1000 | |
| Software, algorithm | MATLAB | MathWorks | RRID: SCR_001622 | https://uk.mathworks.com/products/matlab.html | |
| Software, algorithm | LabView | National Instruments | RRID: SCR_014325 | http://www.ni.com/en-gb/shop/labview.html | |
| Software, algorithm | Prism | GraphPad | RRID: SCR_002798 | https://www.graphpad.com/scientific-software/prism/ | |
| Software, algorithm | FIJI | PMID: 22743772 | RRID: SCR_002285 | https://imagej.net/Fiji/Downloads | |
| Software, algorithm | Simple NeuriteTracer (ImageJ plugin) | PMID: 21727141 | RRID: SCR_016566 | https://imagej.net/Simple_Neurite_Tracer | |
| Software, algorithm | Advanced Normalization Tools (ANTs) | PMID: 20851191 | RRID: SCR_004757 | http://stnava.github.io/ANTs/ | |
| Software, algorithm | Psychophysics Toolbox | PMID: 9176952 | RRID: SCR_002881 | http://psychtoolbox.org/ | |
| Software, algorithm | Zebrafish Brain Browser (ZBB) | PMID: 26635538 | https://science.nichd.nih.gov/confluence/display/burgess/Brain+Browser | ||
| Software, algorithm | MATLAB script for cell detection | PMID: 27881303 | https://github.com/ahrens-lab/Kawashima_et_al_Cell_2016/ | ||
| Software, algorithm | Kernel Density Estimation Toolbox for MATLAB | https://www.ics.uci.edu/~ihler/code/kde.html |