Table 2.

Comparison of fold change difference between RNA-seq and qRT-PCR.

Gene	RNA-seq		qRT-PCR
	*FC	p-value	**FC [std error]	p-value
pgaD	1.78	0.0329	1.775[1.612 to 1.924]	<0.001
fliC	2.12	0.0396	2.236[2.085 to 2.399]	<0.001
cheY	1.76	0.0348	1.813 [1.692 to 2.001]	<0.001
malP	2.4	0.0286	2.426[2.275 to 2.573]	0.024
malZ	2.5	0.0382	2.495[2.339 to 2.674]	0.039
motB	1.69	0.0355	1.804 [1.743 to 1.915]	0.04
alsC	−1.42	0.0388	−1.35[−1.48 to −1.26]	<0.001
alsK	−8.78	0.0459	−8.33 [−9 to −7.63]	<0.001
appB	−2.47	0.0473	−3.38 [−3.69 to −3.15]	0.036
appX	−1.5	0.0183	−1.53[−1.7 to −1.41]	0.033

^*FC: fold change.

**[std error]: standard error interval.