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. 2019 Oct 8;9:14455. doi: 10.1038/s41598-019-51002-5

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Phylogenetic analysis based on core-genome SNPs separates market-food-derived IMI-1-producing isolates into groups G, M, and N of the E. cloacae complex. A phylogenetic tree was constructed using the genome of E. cloacae ATCC13047 (GenBank accession number NC_014121.1) as a reference. Genomic sequences of other E. cloacae complex strains were retrieved from NCBI and included in the analysis. The food isolates acquired in this study are in bold; strains belonging to groups G, M, and N are marked in grey.