Table 3.
Male-specific variants in scaffold_064.
| Position (bp) | Allele | Genotype (Ref/Het/Alt) | p-value | ||
|---|---|---|---|---|---|
| Reference | Alternative | Females | Males | ||
| 3723782 | A | T | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3723876 | A | G | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3723925 | T | C | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3724050 | C | T | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3724051 | A | G | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3724070 | A | G | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3724479 | G | T | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3724481 | T | G | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3724494 | C | T | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3724556 | C | T | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3724561 | C | A | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3724625 | T | G | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3724697 | GTAATGTA | G | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3725864 | T | C | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3725869 | G | A | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3725870 | C | T | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3725892 | C | T | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3725903 | G | A | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3725915 | G | A | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3725924 | G | C | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3725968 | G | A | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3725974 | G | A | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3726082 | A | G | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3726098 | C | T | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3726136 | G | T | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3726155 | A | G | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3726182 | G | T | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3726338 | G | C | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3726374 | T | C | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3726420 | G | A | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3726427 | A | T | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3726477 | C | T | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3726480 | T | A | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3726530 | C | T | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3726649 | G | T | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3726723 | T | A | 16/0/0 | 0/14/0 | 6.88E-09 |
| 3726751 | A | G | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3726760 | C | T | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3726826 | C | T | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3727016 | C | T | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3727037 | A | G | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3727050 | C | T | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3727069 | C | T | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3729537 | C | A | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3729736 | C | T | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3729866 | T | C | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3730062 | C | A | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3730221 | C | T | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3730222 | G | A | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3730268 | C | T | 16/0/0 | 0/15/0 | 3.33E-09 |
| 3730295 | T | A | 16/0/0 | 0/15/0 | 3.33E-09 |
All polymorphisms have homozygous in all females (n = 16) and heterozygous in all males (n = 14 or 15), where p-values are significant using Fisher’s exact test.
Ref; homozygous reference (Tuna_2), Het; heterozygous, Alt; homozygous alternative.