Table 2.
Comparison (% identity) between nucleotide sequence of whole genome and the deduced amino acids of putative encoded proteins of LCV-Can and other LCV isolates.
| Viruses a | LCV-Can | LCV-Almeria | LCV (California) | LCV-PTX | LCV-CN | LCV-NJ |
|---|---|---|---|---|---|---|
| RNA1 Putative proteins (aa.) | Whole genome (nt.) | 99 | 89 | 89 | 85 | 85 |
| 1a | 99 | 94 | 94 | 91 | 91 | |
| RdRp | 100 | 99 | 99 | 99 | 99 | |
| P8 | - | 74 | 74 | 55 | 57 | |
| P23 | - | 75 | 75 | 77 | 77 | |
| RNA2 Putative proteins (aa.) | Whole genome (nt.) | 99 | 90 | 90 | 89 | 89 |
| P5.6 | 100 | 92 | 92 | 91 | 91 | |
| P6-like | - | 52 | 52 | - | - | |
| HSP70 | 100 | 98 | 98 | 99 | 98 | |
| P6.4 | 100 | 98 | 98 | 98 | 98 | |
| P60 | 99 | 97 | 97 | 95 | 95 | |
| P9 | 100 | 96 | 96 | 96 | 96 | |
| CP | 100 | 96 | 95 | 98 | 98 | |
| CPm | 99 | 96 | 96 | 92 | 92 | |
| P27 | 99 | 95 | 97 | 97 | 97 |