| CaM | calmodulin |
| ChiVMV | chilli veinal mottle virus |
| CK | control |
| CMV | cucumber mosaic virus |
| DEGs | differentially expressed genes |
| DPI | days post-inoculation |
| EDS1 | enhanced disease susceptibility 1 |
| ERF | ethylene-responsive transcription factor |
| ETH | ethylene |
| GO | Gene Ontology |
| JA | jasmonic acid |
| JAZ | jasmonate ZIM-domain |
| KEGG | Kyoto Encyclopedia of Genes and Genomes |
| log2FC | log2Fold Change |
| LC | Control in the shade |
| LS | SMV infection in the shade |
| NC | Control under normal light |
| NS | SMV infection under normal light |
| PAR | photosynthetically active radiation |
| phyB | phytochrome B |
| PR1 | pathogenesis-related 1 |
| qRT-PCR | quantitative real-time PCR |
| R:FR | red:far red-light ratio |
| RPKM | reads per kb per million reads |
| SA | salicylic acid |
| SAS | shade avoidance syndrome |
| SMV | soybean mosaic virus |
| TF | transcription factor |
| TuMV | turnip mosaic virus |