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. 2019 May 20;4(8):1356–1367. doi: 10.1038/s41564-019-0449-y

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© The Author(s), under exclusive licence to Springer Nature Limited 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 2 — Phylogenetic tree constructed with a concatenated alignment of 15 co-located ribosomal proteins (L2, L3, L4, L5, L6, L14, L15, L16, L18, L22, L24, S3, S8, S17 and S19). The tree includes 722 bacterial and 71 archaeal genomes. The two Chloroflexi classes basal to classic Chloroflexi lineages are named. Concentric rings moving outward from the tree indicate if a genome’s associated SG abundance was found to significantly increase or decrease with depth and increase or decrease in plots under extended rainfall treatment at either 10–20 cm or 30–40 cm. For all genomes shown, the direction of response (increase or decrease) to extended rainfall treatment was never different between depths. The concentric bar plot indicates relative abundance (see Methods). For the complete ribosomal protein tree, see Supplementary Fig. 4 and Supplementary Data 5. For all exact relative abundance values and differential abundance statistics, see Supplementary Table 5.