Table 2. Correlation of within donor and preservation method probe error with probe properties.
PAXgene®RNA | RNAgard® | PBMC/Trizol | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Var | p-val | FD | vs Gard | vs PBMC | Var | p-val | FD | vs Pax | vs PBMC | Var | p-val | FD | vs pax | vs gard | |
Dist3 | -0.009 | 0.001 | 0.032 | 0.031 | 0.035 | 0.000 | 0.006 | 0.054 | 0.031 | 0.056 | -0.022 | 0.008 | 0.060 | 0.035 | 0.056 |
Dist5 | -0.034 | 0.013 | 0.000 | 0.001 | 0.076 | -0.026 | 0.024 | 0.027 | 0.001 | 0.054 | -0.036 | 0.004 | 0.031 | 0.076 | 0.054 |
TranscriptSize | -0.034 | 0.012 | 0.009 | 0.008 | 0.081 | -0.025 | 0.025 | 0.040 | 0.008 | 0.065 | -0.040 | 0.005 | 0.044 | 0.081 | 0.065 |
GeneSize | -0.032 | 0.013 | 0.012 | 0.003 | 0.087 | -0.021 | 0.024 | 0.046 | 0.003 | 0.068 | -0.036 | 0.007 | 0.049 | 0.087 | 0.068 |
GCpercent | 0.017 | -0.010 | 0.021 | 0.072 | -0.056 | 0.088 | -0.011 | 0.045 | 0.072 | -0.035 | -0.001 | -0.006 | 0.061 | -0.056 | -0.035 |
meanM | 0.312 | -0.101 | 0.150 | -0.258 | -0.223 | 0.286 | -0.024 | 0.043 | -0.258 | -0.196 | 0.244 | -0.067 | 0.013 | -0.223 | -0.196 |
meanA | -0.007 | -0.171 | -0.221 | -0.252 | -0.384 | -0.020 | -0.159 | -0.357 | -0.252 | -0.398 | -0.023 | -0.124 | -0.477 | -0.384 | -0.398 |