Table 1. ENCODE cell types used in this study.
| Cell Type | Description | Karyotype | Lineage | Tissue | Replicates |
|---|---|---|---|---|---|
| H1-hESC | Embryonic stem cell | Normal | ICM | ESC | 4 |
| GM12878 | B-lymphocyte | Normal | mesoderm | blood | 4 |
| K562 | Leukemia | Cancer | mesoderm | blood | 3 |
| HeLa-S3 | Cervical carcinoma | Cancer | ectoderm | cervix | 3 |
| HepG2 | Hepatocellular carcinoma | Cancer | endoderm | liver | 3 |
| HUVEC | Umbilical vein endothelial cells | Normal | mesoderm | vessel | 3 |
| SK-N-SH | Neuroblastoma | Cancer | ectoderm | brain | 1 |
| IMR90 | Fetal lung fibroblasts | Normal | endoderm | lung | 1 |
| A549 | Lung carcinoma | Cancer | endoderm | lung | 1 |
| MCF-7 | Mammary gland adenocarcinoma | Cancer | ectoderm | breast | 2 |
| CD20+ | CD20+ B cells | Normal | mesoderm | blood | 1 |
| CD14+ | CD14+ Monocytes | Normal | mesoderm | blood | 1 |
| NHEK | Epidermal keratinocytes | Normal | ectoderm | skin | 3 |