Table 1.
Summary of the RNA-Seq data in three stages of ‘Dangshan Su’ fruit
| ID | ‘Dangshan Su’ fruit of 0 DAP | ‘Dangshan Su’ fruit of 7 DAP | ‘Dangshan Su’ fruit of 15 DAP | ||||||
|---|---|---|---|---|---|---|---|---|---|
| 0 DAP-1 | 0 DAP-2 | 0 DAP-3 | 7 DAP-1 | 7 DAP-2 | 7 DAP-3 | 15 DAP-1 | 15 DAP-2 | 15 DAP-3 | |
| Total reads | 50313188 | 53291526 | 51885204 | 35573064 | 31374310 | 38135470 | 45576288 | 40812768 | 45463438 |
| Total mapped | 40506401 (80.51%) | 42693772 (80.11%) | 41596368 (80.17%) | 28379560 (79.78%) | 25200858 (80.32%) | 30434463 (79.81%) | 36456831 (79.99%) | 32775750 (80.31%) | 36565932 (80.43%) |
| GC Content | 48.27% | 48.92% | 49.11% | 48.61% | 48.42% | 48.56% | 48.78% | 48.59% | 48.40% |
| Q20a | 98.45% | 98.54% | 98.43% | 96.60% | 96.74% | 96.63% | 96.64% | 96.37% | 96.49% |
| Q30b | 94.63% | 94.82% | 94.65% | 92.44% | 92.60% | 92.17% | 92.13% | 91.75% | 92.05% |
| Mutiple mapped | 9.76% | 9.77% | 9.71% | 8.70% | 8.74% | 8.62% | 8.42% | 8.38% | 8.35% |
| Uniquely mapped | 70.75% | 70.35% | 70.46% | 71.08% | 71.25% | 71.19% | 71.90% | 71.93% | 72.08% |
| Reads map to ‘+’ | 35.49% | 35.32% | 35.37% | 35.62% | 35.71% | 35.66% | 35.97% | 35.99% | 36.06% |
| Reads map to ‘-’ | 35.26% | 35.03% | 35.09% | 35.46% | 35.55% | 35.53% | 35.92% | 35.94% | 36.02% |
| Non-splice reads | 45.70% | 44.71% | 44.77% | 45.50% | 45.57% | 45.44% | 46.13% | 46.15% | 45.99% |
| Splice reads | 25.05% | 25.63% | 25.69% | 25.58% | 25.69% | 25.75% | 25.77% | 25.78% | 26.09% |