Table 2.
Expression level of key enzymes in lignin biosynthesis pathway of ‘Dangshan Su’ pear
| Gene name | Genome ID | 0 DPA VS 7 DPA TPM | 7 DPA VS 15 DPA TPM | 0 DPA VS 15 DPA TPM | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| 0 DPA | 7 DPA | DEGs | 7 DPA | 15 DPA | DEGs | 0 DPA | 15 DPA | DEGs | ||
| PbPAL1 | Pbr008363.1 | 55.552 | 156.094 | UP | 156.094 | 275.613 | UP | 55.552 | 275.613 | UP |
| PbPAL2 | Pbr008387.1 | 0.0001 | 0.0001 | * | 0.0001 | 0.0001 | * | 0.0001 | 0.0001 | * |
| PbPAL3 | Pbr016460.1 | 27.557 | 53.181 | * | 53.181 | 108.033 | UP | 27.557 | 108.033 | UP |
| PbC4H1 | Pbr017290.1 | 300.966 | 259.520 | * | 259.520 | 1299.55 | UP | 300.966 | 1299.55 | UP |
| PbC4H2 | Pbr013141.1 | 406.084 | 370.695 | * | 370.695 | 360.987 | * | 406.084 | 360.987 | * |
| PbC4H3 | Pbr013138.1 | 35.905 | 37.884 | * | 37.884 | 5.084 | DOWN | 35.905 | 5.084 | DOWN |
| PbC3H | Pbr020891.1 | 0.164 | 0.0001 | * | 0.0001 | 6.129 | UP | 0.164 | 6.129 | UP |
| Pb4CL1 | Pbr024635.1 | 3.706 | 8.496 | UP | 8.496 | 82.318 | UP | 3.706 | 82.318 | UP |
| Pb4CL2 | Pbr012851.1 | 34.962 | 158.292 | UP | 158.292 | 391.148 | UP | 34.962 | 391.148 | UP |
| PbCCoAOMT | Pbr034039.1 | 6.174 | 19.613 | * | 19.613 | 389.731 | UP | 6.174 | 389.731 | UP |
| PbHCT2 | Pbr005360.1 | 17.081 | 8.925 | * | 8.925 | 34.744 | UP | 17.081 | 34.744 | UP |
| PbHCT17 | Pbr006709.1 | 1.926 | 109.163 | UP | 109.163 | 181.963 | * | 1.926 | 181.963 | UP |
| PbHCT18 | Pbr006711.1 | 0.0001 | 0.638 | * | 0.638 | 2.037 | * | 0.0001 | 2.037 | * |
| PbHCT49 | Pbr022422.1 | 808.729 | 1403.77 | * | 1403.77 | 574.853 | DOWN | 808.729 | 574.853 | * |
| PbHCT50 | Pbr022425.1 | 13.861 | 66.308 | UP | 66.308 | 210.283 | UP | 13.861 | 210.283 | UP |
| PbF5H1 | Pbr040547.1 | 0.381 | 0.842 | * | 0.842 | 31.635 | UP | 0.381 | 31.635 | UP |
| PbF5H2 | Pbr022142.1 | 1.748 | 4.611 | * | 4.611 | 103.477 | UP | 1.748 | 103.477 | UP |
| PbCCR1 | Pbr022402.1 | 14.366 | 34.882 | UP | 34.882 | 141.894 | UP | 14.366 | 141.894 | UP |
| PbCCR2 | Pbr022405.1 | 35.409 | 76.935 | UP | 76.935 | 165.976 | UP | 35.409 | 165.976 | UP |
| PbCCR3 | Pbr022403.1 | 0.157 | 0.338 | * | 0.338 | 0.719 | * | 0.157 | 0.719 | * |
| PbCOMT1 | Pbr034039.1 | 6.174 | 19.613 | UP | 19.613 | 389.731 | UP | 6.174 | 389.731 | UP |
| PbCOMT3 | Pbr038709.1 | 30.472 | 77.014 | UP | 77.014 | 483.801 | UP | 30.472 | 483.801 | UP |
| PbCAD1 | Pbr040236.1 | 0.237 | 0.108 | * | 0.108 | 0.0001 | * | 0.237 | 0.0001 | * |
| PbCAD2 | Pbr026287.1 | 7.771 | 10.568 | * | 10.568 | 29.151 | UP | 7.771 | 29.151 | UP |
| PbCAD3 | Pbr026289.1 | 2.318 | 12.256 | UP | 12.256 | 1.487 | DOWN | 2.318 | 1.487 | * |
| PbLAC1 | Pbr003857.1 | 0.097 | 3.876 | * | 3.876 | 197.086 | UP | 0.097 | 197.086 | UP |
| PbLAC14 | Pbr018935.1 | 0.051 | 0.018 | * | 0.018 | 1.384 | * | 0.051 | 1.384 | * |
| PbPOD1 | Pbr035186.1 | 485.635 | 299.328 | * | 299.328 | 398.483 | * | 485.635 | 398.483 | * |
| PbPOD2 | Pbr031894.1 | 270.852 | 1455.64 | UP | 1455.64 | 2402.79 | * | 270.852 | 2402.79 | UP |
| PbPOD3 | Pbr034480.1 | 0.643 | 3.399 | * | 3.399 | 3.586 | * | 0.643 | 3.586 | * |
| PbSAD | Pbr004675.1 | 0.0001 | 0.399 | * | 0.399 | 2.777 | * | 0.0001 | 2.777 | * |
| PbUGT1 | Pbr005011.1 | 0.278 | 0.0001 | * | 0.0001 | 0.0001 | * | 0.278 | 0.0001 | * |
| PbUGT2 | Pbr005013.1 | 0.0001 | 0.0001 | * | 0.0001 | 0.0001 | * | 0.0001 | 0.0001 | * |
| PbUGT3 | Pbr005014.1 | 2.889 | 5.195 | * | 5.195 | 2.077 | DOWN | 2.889 | 2.077 | * |
*Indicates that the gene is not differentially expressed gene