Table 1.
List of columns presenting the microRNAs and features detailed in the RumimiR database
| Column name | Description |
|---|---|
| Chr (Start, End) | Genomic position of the microRNA |
| Multi-mapping | Number of localizations in case of multi-mapping (with 100% query cover and 100% identity) |
| Sequence | Sequence of the mature microRNA |
| Publication | Publication in which the microRNA is described |
| Name | Name assigned to the microRNA |
| IsomiRs | Name of isomiRs of the microRNA (sequence and genomic position almost identical) |
| RumimiR ID | Name of the microRNA with the RumimiR nomenclature |
| Family | microRNA family to which the microRNA is affiliated |
| Tissue | Tissue in which the microRNA was discovered |
| Breed | Breed used during the study |
| Study conditions | Conditions prevailing during the study |
| Lactation stages | Lactation stages of the animals studied |
| Age | Age of the animals studied |
| Species | Species of the animals studied (bovine, caprine or ovine) |
| Number | Number of novel microRNAs described in the publication |
| Cut-off | Cut-off point used in the publication to detect novel microRNAs |
| Method | Method used to detect novel microRNAs |
| Number and breed | Number of animals studied in each breed |
| Reference genome | UMD3.1.1, ARS1 or Oar v4.0 |
| Bioinformatics tools used | Software used in the study for the microRNA detection |
| Condition details | Details of study conditions (i.e. number of animals per condition) |
| 5p/3p | If the microRNA is 5p or 3p |
| Strand (+/−) | Strand in which the microRNA is situated |
| Star sequence | Sequence of the star microRNA |
| Matching seed | Known microRNA with the same seed |
| small RNAs | If the microRNA described is in fact part of a snoRNA, tRNA, snRNA or rRNA |
| hsa homology | Similarity with a human microRNA |
| mmu homology | Similarity with a mouse microRNA |
| False-positive code | Four-digit false-positive code |
Gray lines indicate a feature that is present in RumimiR but not in miRBase.