Table 1.
The top ten strains, species, and genera identified in 10,000 human stool samples, based on their prevalence. See supplementary materials for all taxa identified in 10,000 human stool samples ( for strain, for species, for genera).
| Top 10 genera | Top 10 species | Top 10 strains | |||
|---|---|---|---|---|---|
| Genus | Prevalence (%) | Species | Prevalence (%) | Strains | Prevalence (%) |
| Clostridium | 99.7 | Bacteroides vulgatus | 97.1 | Eggerthella lenta 1_1_60AFAA | 97.1 |
| Bacteroides | 99.6 | Acinetobacter baumannii | 96.8 | (Eubacterium) hallii DSM 3353 | 93.9 |
| Blautia | 97.6 | Faecalibacterium prausnitzii | 96.4 | Veillonella dispar ATCC 17748 | 92.3 |
| Acinetobacter | 97.5 | Bacteroides uniformis | 95.4 | Anaerotruncus colihominis DSM 17241 | 91.4 |
| Eubacterium | 97.2 | Eggerthella lenta | 91.8 | Clostridium phoceensis strain GD3 | 90.8 |
| Parabacteroides | 96.9 | (Eubacterium) hallii | 91.5 | Blautia obeum ATCC 29174 | 89.7 |
| Lactococcus | 96.9 | Anaerotruncus colihominis | 91.4 | (Eubacterium) eligens strain 2789STDY5834875 | 88.9 |
| Faecalibacterium | 96.4 | Clostridium phoceensis | 90.8 | Faecalibacterium cf. prausnitzii KLE1255 | 88.3 |
| Roseburia | 95.7 | Veillonella dispar | 89.0 | Faecalibacterium prausnitzii A2-165 | 86.0 |
| Alistipes | 95.1 | Fusicatenibacter saccharivorans | 87.3 | Roseburia hominis A2-183 | 83.4 |