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. Author manuscript; available in PMC: 2020 Mar 9.
Published in final edited form as: Nat Methods. 2019 Sep 9;16(10):983–986. doi: 10.1038/s41592-019-0535-3

Figure 3. Garnett accurately classifies across species and distinguishes normal and pathological tissue.

Figure 3.

A) Garnett cluster-extended results for human lung tumors from ref14 classified based on a Garnett classifier trained on lung cells from the Mouse Cell Atlas. t-SNE plots of the human lung tumor dataset (n = 52,698 cells). First panel is colored by published type from ref14, second panel colored by the Garnett cluster-extended classification. B) Heatmap comparing the reported cell types versus the Garnett cluster-extended cell types from panel D. Color represents the percent of cells of a certain reported type labelled as each type by Garnett.