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. 2019 May 28;127(5):057011. doi: 10.1289/EHP3849

Figure 2.

Figure 2 is a graph plotting negative log sub 10 values for validation subcohort (BEST) (y-axis), ranging between 0 and 8, across negative log sub 10 values for discovery subcohort (HEALS) (x-axis), ranging between 6 and 12, for direction of association comprising negative, inconsistent, and positive in both cohorts.

Associations between urinary arsenic and CpG methylation discovered in the Health Effects of Arsenic Longitudinal Study (HEALS) and tested for replication in the Bangladesh Vitamin E and Selenium Trial (BEST). Using results from BEST, we attempted to validate 26 arsenic-associated CpGs that annotated to 450K array among the 67 CpGs identified using the EPIC array in HEALS (p<105). The BEST results consisted of associations between log2-transformed urinary arsenic and methylation evaluated for 390,810 CpGs using data on 400 BEST participants with existing 450K array data. Horizontal dashed line represents log10(p=0.05), and solid vertical line corresponds to log10[false discovery rate  (FDR)<0.05]. Direction of association summarizes whether results from the cohorts are both positive (triangle), both negative (square), or inconsistent (directions of association differ) (circle). The corresponding results data are presented in Table 2 and Excel Table S1.