Table 1.
Number of discoveries made by the online FDR procedures (and benchmark comparisons) for the IMPC and yeast datasets, at a FDR level of 5%
| Method | Genotype | SD | Yeast | Method details |
|---|---|---|---|---|
| Fixed | 4158 | 969 | 41 767 | IMPC < 0.0001 |
| Yeast < 0.000032 | ||||
| BH | 12 907 | 2084 | 55 982 | Benjamini and Hochberg |
| LORD 3 | 9685 | 1343 | 53 766 | Based on recent discoveries |
| LORD++ | 8517 | 1193 | 52 352 | Modified version of LORD 2 |
| LORD 2 | 8049 | 1088 | 51 864 | Based on recent discoveries |
| LOND | 2905 | 206 | 44 418 | Based on number of discoveries |
| BH (dep) | 4078 | 315 | 46 486 | BH for arbitrary dependence |
| LOND (dep) | 1475 | 76 | 40 325 | LOND for dependent P-values |
| LORD (dep) | 780 | 25 | 36 833 | LORD for dependent P-values |
| Bonferroni | 795 | 60 | 34 363 | Bonferroni-like procedure |
| N | 172 328 | 172 328 | 417 026 |
SD, sexual dimorphism; dep, dependent; N, total number of P-values.