Table 2.
The inclusion of HCDPs filtered by gene co-expression (GCE-HCDP) to generate extended gene sets led to an overall improved target prioritisation performance when compared with the inclusion of unfiltered HCDPs and un-extended gene sets.
a. Average F1-score | ||
Original test | 0.211 | |
+HCDP | 0.327 | |
+Co-exp-HCDP | 0.341 | |
b. T-test | ||
Original test | +HCDP | |
+HCDP | 5.77×10−18 | |
+Co-exp-HCDP | 5.93×10−22 | 6.14×10−20 |