Table 1. Variants detected by whole genome resequencing of an affected Standard Schnauzer.

Filtering step	Variantsa
Homozygous variants in whole genome	2,891,805
Private homozygous variants in the whole genomeb	5,258
Private homozygous protein changing variants in the whole genome	32
Private homozygous protein changing variants in critical intervalsc	1

^a All called variants were counted (no quality filter was used).

^b Private variants were exclusively called in the affected dog and had homozygous reference or missing genotype calls in 221 control genomes.

^c Intervals of combined linkage and homozygosity (S2 Table)