Table 2.
Accuracy Comparison for Assembler Performance for datasets RM1 and RM2., for specified set of k-values and step size configurations.
| Assembler | # Contigs | N50 (bp) | Max Contig Length | # Contigs | N50 (bp) | Max Contig Length |
|---|---|---|---|---|---|---|
| RM1 k = 40–124,4 | RM2 k = 40–124,4 | |||||
| IDBA-UD | 96291 | 8255 | 641885 | 123807 | 2251 | 572031 |
| ScalaDBG-SP | 94958 | 8104 | 641902 | 122427 | 2281 | 571953 |
| ScalaDBG-PP | 95519 | 7629 | 497722 | 123037 | 2249 | 444176 |
| RM1 k = 40–124,8 | RM2 k = 40–124,8 | |||||
| IDBA-UD | 95633 | 10729 | 772713 | 121911 | 2457 | 563546 |
| ScalaDBG-SP | 96849 | 10183 | 772927 | 121955 | 2582 | 573903 |
| ScalaDBG-PP | 98018 | 7962 | 497730 | 121772 | 2408 | 444517 |
| RM1 k = 40–124,15 | RM2 k = 40–124,15 | |||||
| IDBA-UD | 95640 | 11453 | 772928 | 121720 | 2504 | 563546 |
| ScalaDBG-SP | 99857 | 10182 | 641918 | 119814 | 2679 | 573903 |
| ScalaDBG-PP | 99951 | 7906 | 641988 | 121568 | 2472 | 444518 |