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. 2019 Oct 10;10:2303. doi: 10.3389/fmicb.2019.02303

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Copyright © 2019 Hankel, Jung, Kuder, Keller, Keller, Galvez, Strowig and Visscher.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Microbiota composition analysis using 16S rRNA sequencing in caecal contents of different aged chickens at time of infection. Relative abundance of the 11 most abundant OTUs belonging to bacterial families within different phyla in experiment 1 (A). Relative abundance of the 11 most abundant OTUs belonging to bacterial families within different phyla in experiment 2 (B). Relative abundance of the 11 most abundant OTUs belonging to bacterial families within different phyla in experiment 3 (C). LBC-21/22, Lohmann Brown-Classic, infection at the age of 21/22 days; LBC-70/78, Lohmann Brown-Classic, infection at the age of 70/78 days; NA, OTUs without genus-level taxonomic assignment.